Non-Coding RNA Search

Ss1.1-rplac_18148.5

Sequence:


               
               GAAAGAGGACATGGAAATTCTGATAGAAAAAAAAAGACGCAGGATTTTCACAGCAGAAAA
ACTGGAAGACTGCATGGATTTCGCCACTGAGTTGATTTTGGCTGAGAAACGTGGTGAACT
GACAAAAGAGAATGTGAACCAGTGCATACTGGAAATGCTAATTGCAGCACCAGACACCAT
GTCTGTCACTGTGTTCTTCATGCTGTTTCTCATTGCAAAGCACCCCCAGGTTGAAGAGGA
ACTAATGAAGGAAATCCAGACTGTTGTTGGTGAAAGAGACATAAGGAATGATGACATGCA
AAAACTCGAAGTGGTGGAAAACTTTATTTATGAGAGCATGAGGTACCAGCCTGTCGTGGA
CCTCGTCATGCGAAAAGCCTTAGAGGATGATGTCATCGATGGCTACCCGGTGAAAAAGGG
AACCAACATTATCCTGAATATTGGAAGAATGCATAGACTCGAGTTTTTCCCCAAGCCCAA
TGAATTTACTCTTGAGAACTTTGCCAAGAATGTTCCTTACAGGTACTTCCAGCCATTTGG
CTTTGGGCCCCGGGCCTGTGCGGGAAAGTATATCGCCATGGTCATGATGAAGGTCACTCT
GGTCATACTTCTGAGACGCTTCCAAGTGCAGACACCGCAAGACCGGTGTGTTGAAAAGAT
GCAGAAGAAAAATGATTTATCCTTGCACCCGGATGAGACCAGCGGCCTGCTGGAAATGAT
TTTCATCCCAAGAAATTCAGACAAGAGCCTCGAGCACTAAAGAAAGTTGGTCAGTCCCTG
TCCATCCACATGGAAGCCACCTGTCTTTGCCAGATAGTCCTTCTCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAGGACATGGAAATTCTGATAGAAAAAAAAAGACGCAGGATTTTCACAGCAGAAAA
ACTGGAAGACTGCATGGATTTCGCCACTGAGTTGATTTTGGCTGAGAAACGTGGTGAACT
GACAAAAGAGAATGTGAACCAGTGCATACTGGAAATGCTAATTGCAGCACCAGACACCAT
GTCTGTCACTGTGTTCTTCATGCTGTTTCTCATTGCAAAGCACCCCCAGGTTGAAGAGGA
ACTAATGAAGGAAATCCAGACTGTTGTTGGTGAAAGAGACATAAGGAATGATGACATGCA
AAAACTCGAAGTGGTGGAAAACTTTATTTATGAGAGCATGAGGTACCAGCCTGTCGTGGA
CCTCGTCATGCGAAAAGCCTTAGAGGATGATGTCATCGATGGCTACCCGGTGAAAAAGGG
AACCAACATTATCCTGAATATTGGAAGAATGCATAGACTCGAGTTTTTCCCCAAGCCCAA
TGAATTTACTCTTGAGAACTTTGCCAAGAATGTTCCTTACAGGTACTTCCAGCCATTTGG
CTTTGGGCCCCGGGCCTGTGCGGGAAAGTATATCGCCATGGTCATGATGAAGGTCACTCT
GGTCATACTTCTGAGACGCTTCCAAGTGCAGACACCGCAAGACCGGTGTGTTGAAAAGAT
GCAGAAGAAAAATGATTTATCCTTGCACCCGGATGAGACCAGCGGCCTGCTGGAAATGAT
TTTCATCCCAAGAAATTCAGACAAGAGCCTCGAGCACTAAAGAAAGTTGGTCAGTCCCTG
TCCATCCACATGGAAGCCACCTGTCTTTGCCAGATAGTCCTTCTCATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1762231|gb|AAB61696.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1762231|gb|AAB61696.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               105-271, gnl|bosTau2|chr10 (41524924-41524758)
               

               
               105-271, gnl|Hg17|chr15 (49294723-49294557)
               

               
               105-271, gnl|Mm7|chr9 (54202596-54202430)
               


               
               512-783, gnl|bosTau2|chr10 (41543467-41543738)
               

               
               512-783, gnl|Hg17|chr15 (49290545-49290274)
               

               
               512-783, gnl|Mm7|chr9 (54197634-54197365)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-271, gnl|bosTau2|chr10 (41524924-41524758)
               

               
               105-271, gnl|Hg17|chr15 (49294723-49294557)
               

               
               105-271, gnl|Mm7|chr9 (54202596-54202430)
               


               
               512-783, gnl|bosTau2|chr10 (41543467-41543738)
               

               
               512-783, gnl|Hg17|chr15 (49290545-49290274)
               

               
               512-783, gnl|Mm7|chr9 (54197634-54197365)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.267344)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               tes (0.207814)

	105-271, gnl\|bosTau2\|chr10 (41524924-41524758)
	105-271, gnl\|Hg17\|chr15 (49294723-49294557)
	105-271, gnl\|Mm7\|chr9 (54202596-54202430)

	512-783, gnl\|bosTau2\|chr10 (41543467-41543738)
	512-783, gnl\|Hg17\|chr15 (49290545-49290274)
	512-783, gnl\|Mm7\|chr9 (54197634-54197365)