Non-Coding RNA Search

Ss1.1-rplac_1957.5

Sequence:


               
               TAATAACTAGACTTGGGAAGTGGGGCAGTCTGCAAAGTCAGTGAGGGCTCTTCCTGGACT
GGCCCTGGGTGTGGAGAATGGCAGTCAGCCTTGTTCCTGATTGTGGACCCCAGTGGCATT
CAGGAAGCATAAACATTGAAGCCTATTTTGAAAGAATTGGTTATAAGAACTGGCAGAACA
AATTGGACTTGCAAACATTAACTGACATTTTTCAGCACCAGATCCGAGCCATTCCCTTCG
AGAACCTTAACATCCATTGTGGGGAAGCCACAGAATTGAGCCTGGAGGCCATTTTTGATC
AAGTTGTGAGAAAAAATAGGGGTGGCTGGTGTCTCCAGCTAAATTATTTGCTATACTGGG
CTCTGAGCACAATTGGTTTTAAGGCCACACTATTGGGAGGATGGATTTACATCGCTCCAG
TCAAAAAATATAGTACTGCCATGGTCCACCTCCTGATGAAGGTGACCATTGATGACCGTA
ACTACATTGTTGATGCTGGATATCCTGGCTCTTCCCAGACGTGGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATAACTAGACTTGGGAAGTGGGGCAGTCTGCAAAGTCAGTGAGGGCTCTTCCTGGACT
GGCCCTGGGTGTGGAGAATGGCAGTCAGCCTTGTTCCTGATTGTGGACCCCAGTGGCATT
CAGGAAGCATAAACATTGAAGCCTATTTTGAAAGAATTGGTTATAAGAACTGGCAGAACA
AATTGGACTTGCAAACATTAACTGACATTTTTCAGCACCAGATCCGAGCCATTCCCTTCG
AGAACCTTAACATCCATTGTGGGGAAGCCACAGAATTGAGCCTGGAGGCCATTTTTGATC
AAGTTGTGAGAAAAAATAGGGGTGGCTGGTGTCTCCAGCTAAATTATTTGCTATACTGGG
CTCTGAGCACAATTGGTTTTAAGGCCACACTATTGGGAGGATGGATTTACATCGCTCCAG
TCAAAAAATATAGTACTGCCATGGTCCACCTCCTGATGAAGGTGACCATTGATGACCGTA
ACTACATTGTTGATGCTGGATATCCTGGCTCTTCCCAGACGTGGCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|425280|gb|AAB60523.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|425280|gb|AAB60523.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               119-528, gnl|bosTau2|chr27 (24525527-24525118)
               

               
               119-528, gnl|danRer3|chr7 (28437415-28437854)
               

               
               119-528, gnl|dasNov1|scaffold_1873 (84496-84058)
               

               
               119-528, gnl|echTel1|scaffold_291329 (51325-50884)
               

               
               119-528, gnl|galGal2|chr11 (16018870-16019292)
               

               
               119-528, gnl|hg17|chr8 (18123798-18124239)
               

               
               119-528, gnl|Hg17|chr8 (18301784-18302193)
               

               
               119-528, gnl|loxAfr1|scaffold_21833 (11499-11058)
               

               
               119-528, gnl|mm7|chr8 (65945430-65945871)
               

               
               119-528, gnl|Mm7|chr8 (66001956-66002365)
               

               
               119-528, gnl|monDom2|scaffold_1 (133270639-133270227)
               

               
               119-528, gnl|oryCun1|scaffold_135864 (11322-11764)
               

               
               119-528, gnl|panTro1|chr7 (18917383-18917824)
               

               
               119-528, gnl|rheMac2|chr8 (18114229-18114670)
               

               
               119-528, gnl|rn3|chr16 (23846996-23846555)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-528, gnl|bosTau2|chr27 (24525527-24525118)
               

               
               119-528, gnl|danRer3|chr7 (28437415-28437854)
               

               
               119-528, gnl|dasNov1|scaffold_1873 (84496-84058)
               

               
               119-528, gnl|echTel1|scaffold_291329 (51325-50884)
               

               
               119-528, gnl|galGal2|chr11 (16018870-16019292)
               

               
               119-528, gnl|hg17|chr8 (18123798-18124239)
               

               
               119-528, gnl|Hg17|chr8 (18301784-18302193)
               

               
               119-528, gnl|loxAfr1|scaffold_21833 (11499-11058)
               

               
               119-528, gnl|mm7|chr8 (65945430-65945871)
               

               
               119-528, gnl|Mm7|chr8 (66001956-66002365)
               

               
               119-528, gnl|monDom2|scaffold_1 (133270639-133270227)
               

               
               119-528, gnl|oryCun1|scaffold_135864 (11322-11764)
               

               
               119-528, gnl|panTro1|chr7 (18917383-18917824)
               

               
               119-528, gnl|rheMac2|chr8 (18114229-18114670)
               

               
               119-528, gnl|rn3|chr16 (23846996-23846555)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	119-528, gnl\|bosTau2\|chr27 (24525527-24525118)
	119-528, gnl\|danRer3\|chr7 (28437415-28437854)
	119-528, gnl\|dasNov1\|scaffold_1873 (84496-84058)
	119-528, gnl\|echTel1\|scaffold_291329 (51325-50884)
	119-528, gnl\|galGal2\|chr11 (16018870-16019292)
	119-528, gnl\|hg17\|chr8 (18123798-18124239)
	119-528, gnl\|Hg17\|chr8 (18301784-18302193)
	119-528, gnl\|loxAfr1\|scaffold_21833 (11499-11058)
	119-528, gnl\|mm7\|chr8 (65945430-65945871)
	119-528, gnl\|Mm7\|chr8 (66001956-66002365)
	119-528, gnl\|monDom2\|scaffold_1 (133270639-133270227)
	119-528, gnl\|oryCun1\|scaffold_135864 (11322-11764)
	119-528, gnl\|panTro1\|chr7 (18917383-18917824)
	119-528, gnl\|rheMac2\|chr8 (18114229-18114670)
	119-528, gnl\|rn3\|chr16 (23846996-23846555)