Ss1.1-rplac_2555.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGGAGGGAACTTTATTTAATATTAAAGTCGGGGCGGGGGTCAGAGGGAGGTCGGCTT CACTTGGTGATGGTGTTCGCGTTCATGCTCTTGCCGCTGCCGCTGAGCACGATGTACGGC GTCTTCTGGGCCTTCTGCTTCTCCTGCAGCAAAGCCACGGTGCCCAGGGGCGTGTCGCTC GAGCTCATCTTCTTCAGGAGCGCCTCCTCGTCCAGCTTCTTCATCCGCCGCTCCGTCTTC ATCTTGCCTGAGCCCTTCCCGTGGAAGCGGTGGGACAGCTGCCGGAAGGCCTCCTTGGGT GTGAGCTTCCGGCCCGTCTCGTCCACGTACTCGATCTTGACATCGGGCTTGTAGCCGTCC TTCTCCTTGAAGTCCTGCGTGAAGCCGCGGTACTCCTCCCGCCGGCTGTACTTGTCGTCG ATGGCCATCTTGTCCTCGATGCAGTACACGGCCGACGGCAGGGACTTGTTGGGCGCCTTC ACCCGGGCCACCTTCTGCACCGTCGTCTCCAGCAGCCCTTTGTTCTGACACAGAAGCAGG GCAGCTGCCAGCCCTCTATTCACGATGGGCTCCTCATCCAGGATGGTGGTGGAAGAGGCA GAGAAATCTTGCTGCTGCTTCTCCTCGTCCAGGTTGACTGTGCTCCAGCCAATGTTCTCC TCCCCGTCGGACTCGGAGCCGCCGTTGGCCGAGCGCTCCTCGTCCCGTTCAAAGTCCATG AGCTCCTCCTGCTCCTCCCGGTTGCCGGCCAGCCCGTAGGTAGGGATCTCCCCCAGGGTG CGGCAGAACTCGGACGTGGCGTTGAACACGATGGCCCCCTTCCGCTCCGGGTCCTCCTCC TCCTCCCAGCCCCGCTGGCGAGACTCCAGCCTCTTCACGATCTCCACCACCTTCTCACCG CTGTCCCGCAGCTGCTGCAGCTGCCGCAGCCGGCGCCCCTTCTCCAGCTGCTTCTGCAGC TCCAGCTCGGCTTCGTCCTCCTCCAGCACCTCTGGGGACCCGGATCGCGGGGCTCCGCCC TCCTCCTCGTCGCTGATGTCCATGTTCTCCACACGGGTGTCATCTGACTGCGGGGGCAGA GGCACCGGCTCCTTCTCCTCCTCCTCCTGGGCCTCCTCGTCCGCCTCGGGCACTCGGCGC CGACCCCGGCCCCGCAGCCTGGAGCCGAAGTCCCCGTCCTGAGTCTGGTCCCCGAGAGGC AGCAGGTCGTCGGCCCGCACCACCACCTCCTTCTCCTTCTTGCGGATCTTCTTCACCCTC CGCTTGGTCTTTTTAAAAGTCACCATCTCCTCTGGCGTGAGGTACTCAGAGGCGAGCCGT GGCCCAACCGAGCTCAGGGACTGAGCCTGCAGCCGCAGCTTGGCCCGGATCTCTTCCAGC TCCCGTTCCCGGAGGCCGTCGGCCACGCCGCCCTGCTCCAGCCGGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGGAGGGAACTTTATTTAATATTAAAGTCGGGGCGGGGGTCAGAGGGAGGTCGGCTT CACTTGGTGATGGTGTTCGCGTTCATGCTCTTGCCGCTGCCGCTGAGCACGATGTACGGC GTCTTCTGGGCCTTCTGCTTCTCCTGCAGCAAAGCCACGGTGCCCAGGGGCGTGTCGCTC GAGCTCATCTTCTTCAGGAGCGCCTCCTCGTCCAGCTTCTTCATCCGCCGCTCCGTCTTC ATCTTGCCTGAGCCCTTCCCGTGGAAGCGGTGGGACAGCTGCCGGAAGGCCTCCTTGGGT GTGAGCTTCCGGCCCGTCTCGTCCACGTACTCGATCTTGACATCGGGCTTGTAGCCGTCC TTCTCCTTGAAGTCCTGCGTGAAGCCGCGGTACTCCTCCCGCCGGCTGTACTTGTCGTCG ATGGCCATCTTGTCCTCGATGCAGTACACGGCCGACGGCAGGGACTTGTTGGGCGCCTTC ACCCGGGCCACCTTCTGCACCGTCGTCTCCAGCAGCCCTTTGTTCTGACACAGAAGCAGG GCAGCTGCCAGCCCTCTATTCACGATGGGCTCCTCATCCAGGATGGTGGTGGAAGAGGCA GAGAAATCTTGCTGCTGCTTCTCCTCGTCCAGGTTGACTGTGCTCCAGCCAATGTTCTCC TCCCCGTCGGACTCGGAGCCGCCGTTGGCCGAGCGCTCCTCGTCCCGTTCAAAGTCCATG AGCTCCTCCTGCTCCTCCCGGTTGCCGGCCAGCCCGTAGGTAGGGATCTCCCCCAGGGTG CGGCAGAACTCGGACGTGGCGTTGAACACGATGGCCCCCTTCCGCTCCGGGTCCTCCTCC TCCTCCCAGCCCCGCTGGCGAGACTCCAGCCTCTTCACGATCTCCACCACCTTCTCACCG CTGTCCCGCAGCTGCTGCAGCTGCCGCAGCCGGCGCCCCTTCTCCAGCTGCTTCTGCAGC TCCAGCTCGGCTTCGTCCTCCTCCAGCACCTCTGGGGACCCGGATCGCGGGGCTCCGCCC TCCTCCTCGTCGCTGATGTCCATGTTCTCCACACGGGTGTCATCTGACTGCGGGGGCAGA GGCACCGGCTCCTTCTCCTCCTCCTCCTGGGCCTCCTCGTCCGCCTCGGGCACTCGGCGC CGACCCCGGCCCCGCAGCCTGGAGCCGAAGTCCCCGTCCTGAGTCTGGTCCCCGAGAGGC AGCAGGTCGTCGGCCCGCACCACCACCTCCTTCTCCTTCTTGCGGATCTTCTTCACCCTC CGCTTGGTCTTTTTAAAAGTCACCATCTCCTCTGGCGTGAGGTACTCAGAGGCGAGCCGT GGCCCAACCGAGCTCAGGGACTGAGCCTGCAGCCGCAGCTTGGCCCGGATCTCTTCCAGC TCCCGTTCCCGGAGGCCGTCGGCCACGCCGCCCTGCTCCAGCCGGAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 78-201, gnl|bosTau2|chr29 (30573757-30573634) | |
| 78-201, gnl|Hg17|chr11 (65502962-65502839) | |
| 78-201, gnl|Mm7|chr19 (5275025-5275148) | |
| 290-426, gnl|bosTau2|chr29 (30573075-30572939) | |
| 290-426, gnl|Hg17|chr11 (65501947-65501811) | |
| 290-426, gnl|Mm7|chr19 (5275786-5275922) | |
| 976-1188, gnl|bosTau2|chr29 (30566027-30565816) | |
| 976-1188, gnl|Hg17|chr11 (65491673-65491485) | |
| 976-1188, gnl|Mm7|chr19 (5277699-5277912) | |
| 1280-1428, gnl|bosTau2|chr29 (30564972-30564824) | |
| 1280-1428, gnl|canFam2|chr18 (54334681-54334459) | |
| 1280-1428, gnl|danRer3|chr21 (22150779-22150574) | |
| 1280-1428, gnl|dasNov1|scaffold_47886 (4880-5102) | |
| 1280-1428, gnl|fr1|chrUn (18948403-18948198) | |
| 1280-1428, gnl|hg17|chr11 (65490384-65490606) | |
| 1280-1428, gnl|Hg17|chr11 (65490607-65490459) | |
| 1280-1428, gnl|mm7|chr19 (5278647-5278425) | |
| 1280-1428, gnl|Mm7|chr19 (5278422-5278570) | |
| 1280-1428, gnl|panTro1|chr9 (66742262-66742484) | |
| 1280-1428, gnl|rheMac2|chr14 (8483181-8482959) | |
| 1280-1428, gnl|rn3|chr1 (208183896-208183674) | |
| 1280-1428, gnl|tetNig1|chr18 (7679519-7679329) | |
| 1280-1428, gnl|xenTro1|scaffold_502 (614255-614041) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-201, gnl|bosTau2|chr29 (30573757-30573634) | |
| 78-201, gnl|Hg17|chr11 (65502962-65502839) | |
| 78-201, gnl|Mm7|chr19 (5275025-5275148) | |
| 290-426, gnl|bosTau2|chr29 (30573075-30572939) | |
| 290-426, gnl|Hg17|chr11 (65501947-65501811) | |
| 290-426, gnl|Mm7|chr19 (5275786-5275922) | |
| 976-1188, gnl|bosTau2|chr29 (30566027-30565816) | |
| 976-1188, gnl|Hg17|chr11 (65491673-65491485) | |
| 976-1188, gnl|Mm7|chr19 (5277699-5277912) | |
| 1280-1428, gnl|bosTau2|chr29 (30564972-30564824) | |
| 1280-1428, gnl|canFam2|chr18 (54334681-54334459) | |
| 1280-1428, gnl|danRer3|chr21 (22150779-22150574) | |
| 1280-1428, gnl|dasNov1|scaffold_47886 (4880-5102) | |
| 1280-1428, gnl|fr1|chrUn (18948403-18948198) | |
| 1280-1428, gnl|hg17|chr11 (65490384-65490606) | |
| 1280-1428, gnl|Hg17|chr11 (65490607-65490459) | |
| 1280-1428, gnl|mm7|chr19 (5278647-5278425) | |
| 1280-1428, gnl|Mm7|chr19 (5278422-5278570) | |
| 1280-1428, gnl|panTro1|chr9 (66742262-66742484) | |
| 1280-1428, gnl|rheMac2|chr14 (8483181-8482959) | |
| 1280-1428, gnl|rn3|chr1 (208183896-208183674) | |
| 1280-1428, gnl|tetNig1|chr18 (7679519-7679329) | |
| 1280-1428, gnl|xenTro1|scaffold_502 (614255-614041) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ill (0.351185) | |
| fce (0.271592) | |
| eye (0.170503) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| cov (0.132153) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| fce (0.271592) | |
| eye (0.170503) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| cov (0.132153) |