Non-Coding RNA Search

Ss1.1-rplac_2572.5

Sequence:


               
               GCTGAACTAGTAAAGGAACTTCGTTGTGAACTTGACCAGCTCCTCCAGGATAAGATTAAA
AACCCAAGCATAGATCTGTGTACCTGTCCTCGAGGGTCACGGATCATCAGCATGATTGTG
AAACTTGTCACCACACAATGAAGCCCAGTCTTGGGAGAGTGCTTGCTACTTACCTGCCTG
CTTGCTCACCTGGGAAACAGCAGCAGCCCCTCTACCTCGAACTACAGCTCCAGCTGGGGC
TGCCCTGGTGAAGGAGCCCAGGGCAGGCACACCTCGAGGGAGATTTTCCAGAATAAGTAT
TTCTAACCAAGTAGTGGGCACTCCCAGCACAATTTGGAGTGTTGATTGAGACTTTAGAAA
CCAACTTGCCTGTCTTTCTCTGTGACTGTCGTGGAATGAATGAATTTCATCTGATAATAC
AAAAGTGAATGTTTAGTAGATTCCGTTTTAATCTATGTATTATTTCTCCTGCTTTTTACT
AGAGTGAGTTATGGGGCATGAGGAGAAATACCAGTTGTTCTTTTCTGTTGTAGAGGCTCA
GTAGAGAGAAGTCAGAACAGAGAAGGAAAATAATCATGTGAGCAAGAAAAATTAAATCTC
CTTTTCAGCTATAGGCCATTATATAAACTTCATTTGTGAGGGATTTTTATTTTTATTCAT
TAAAGTCCAGCTTAAAAAAACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAACTAGTAAAGGAACTTCGTTGTGAACTTGACCAGCTCCTCCAGGATAAGATTAAA
AACCCAAGCATAGATCTGTGTACCTGTCCTCGAGGGTCACGGATCATCAGCATGATTGTG
AAACTTGTCACCACACAATGAAGCCCAGTCTTGGGAGAGTGCTTGCTACTTACCTGCCTG
CTTGCTCACCTGGGAAACAGCAGCAGCCCCTCTACCTCGAACTACAGCTCCAGCTGGGGC
TGCCCTGGTGAAGGAGCCCAGGGCAGGCACACCTCGAGGGAGATTTTCCAGAATAAGTAT
TTCTAACCAAGTAGTGGGCACTCCCAGCACAATTTGGAGTGTTGATTGAGACTTTAGAAA
CCAACTTGCCTGTCTTTCTCTGTGACTGTCGTGGAATGAATGAATTTCATCTGATAATAC
AAAAGTGAATGTTTAGTAGATTCCGTTTTAATCTATGTATTATTTCTCCTGCTTTTTACT
AGAGTGAGTTATGGGGCATGAGGAGAAATACCAGTTGTTCTTTTCTGTTGTAGAGGCTCA
GTAGAGAGAAGTCAGAACAGAGAAGGAAAATAATCATGTGAGCAAGAAAAATTAAATCTC
CTTTTCAGCTATAGGCCATTATATAAACTTCATTTGTGAGGGATTTTTATTTTTATTCAT
TAAAGTCCAGCTTAAAAAAACAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-268, gnl|bosTau2|chr11 (15956710-15956964)
               

               
               1-268, gnl|Hg17|chr2 (38937232-38936964)
               

               
               1-268, gnl|Mm7|chr17 (78534640-78534401)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-268, gnl|bosTau2|chr11 (15956710-15956964)
               

               
               1-268, gnl|Hg17|chr2 (38937232-38936964)
               

               
               1-268, gnl|Mm7|chr17 (78534640-78534401)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               pla (0.267344)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               eep (0.122564)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               eep (0.122564)

	1-268, gnl\|bosTau2\|chr11 (15956710-15956964)
	1-268, gnl\|Hg17\|chr2 (38937232-38936964)
	1-268, gnl\|Mm7\|chr17 (78534640-78534401)

	pla (0.267344)
	sag (0.182715)
	rec (0.17307)
	liv (0.146284)
	hlv (0.139256)
	sug (0.127291)
	eep (0.122564)