Non-Coding RNA Search

Ss1.1-rplac_2731.5.5

Sequence:


               
               CTAACCGGGGCGAGTCAAGGGGAATCTCATGTCAATCTCGTTTTGTAACTGTGTGGGTCG
CCCGTCGGCCCCAGGAACATTTTTTCTAGCCTCTAACAGAATTCTCTCTCGTTCCTCAGT
TGTGAAGAGTGTCTGTAGCAGCTGCTGACAATCATCCCAAGTAGGCTGGTGGGAGAACAT
AAGGGACTCCACTAACGCCGTGAGGCGTTGGGGATCCTCCGAGAAAGGGGGATGGTTAGT
TTTCCAATTATAGAGATCTGCAGAAGAAAAGGGCCAATACTGGAGGGGCTGCAATTGGCT
CCCCGGTATGGGAGGGTCGTGCGCAGCGGTAATGTCGCGATCTCGTCTGTCCGCTCCGGG
GTGGCGCCCTTCCGGCTCCGAGTCCCTGCAGCAGGTCCCTCCATCGTCGGAGCTCCAGGA
GGGGCAGAGGGTCCCCTCGCAGCACCCTGTGCCGGATAAGGGGGTGGGGGAACAGATTGG
GGTTCCGGCCAAGCCGGCGGCTCCTCAATCTCGGGGTAGATAGAGGAGAGGGCTTGACTT
TTAATAGATCGCAGCGAGGGAGCTGTTCTGCTACGTACGAAACCCCGACCCAGAAGCAGG
TCGTCTACGGATGGTTTAGCACCAGGTTCCCCACGAACGTGCGGTGTGTGACGGGCGAGG
GGGGCGGCCGCGCTTTCCGGCCGTGCCCCGTTTCCCAGGACGAAGGGCTCTCCGCACCGG
ACCCCGGTCCCGACGCGCGACGGGACACGCCGCACGCGGGCGCGCGCGGCGGTCCGCCGG
CGGGGACGGCGGGGGACCGGAGATGGTAGCTTTGCCCCATTGGCTCCTCAGCCAAGCAGG
AGAGGGGTCGTCACCGTCTGTCCCATATTAAAACTGTAGACAAGGACACACAAAACAAAG
ATACACAAAACAGAAACCAACAGATCCAGACACACGCGACCCGCCCGCGTCTTCCACAAG
CAGGCAAAAGAGTCGGACGGTCGTGGAGGGGGAAGCTTTCGCTTCAACAACAGAACTCGG
TCCTCTGACCGACAGAAGGAGACCACCAGGCGTCCCTGGCTCTCCCCACCTCCCGGGGCG
TCCCCCAGGGCGGCAGCCTGTGATCCTCCTAGCACGTCTGCTGATCACAGTCCCCCAGTC
CTTACGGTCTGAGAGGACAGCTGCAAACCGAAAGCGCGCACCACTGAAAACAGACACTCA
GAACAGAGACGCCGGCCGGTACATGCAGACACGTTAAAAAAGAAGGATCCTTTTTACCTC
CAAGTCGGTTCTCGGGTGTTAGGGGTGGCCGCGACAGATCCCGGACGAGCCCCCAAATGT
AAGACCAAGAAAAAGAACCTCCAGGCTCGGAAGAGGCGACTCCCCTTAATCACTCACGAG
AAGCGGTCTTGATGCAAACAGCAAGAGGATTTTTATTCCAAGCGCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAACCGGGGCGAGTCAAGGGGAATCTCATGTCAATCTCGTTTTGTAACTGTGTGGGTCG
CCCGTCGGCCCCAGGAACATTTTTTCTAGCCTCTAACAGAATTCTCTCTCGTTCCTCAGT
TGTGAAGAGTGTCTGTAGCAGCTGCTGACAATCATCCCAAGTAGGCTGGTGGGAGAACAT
AAGGGACTCCACTAACGCCGTGAGGCGTTGGGGATCCTCCGAGAAAGGGGGATGGTTAGT
TTTCCAATTATAGAGATCTGCAGAAGAAAAGGGCCAATACTGGAGGGGCTGCAATTGGCT
CCCCGGTATGGGAGGGTCGTGCGCAGCGGTAATGTCGCGATCTCGTCTGTCCGCTCCGGG
GTGGCGCCCTTCCGGCTCCGAGTCCCTGCAGCAGGTCCCTCCATCGTCGGAGCTCCAGGA
GGGGCAGAGGGTCCCCTCGCAGCACCCTGTGCCGGATAAGGGGGTGGGGGAACAGATTGG
GGTTCCGGCCAAGCCGGCGGCTCCTCAATCTCGGGGTAGATAGAGGAGAGGGCTTGACTT
TTAATAGATCGCAGCGAGGGAGCTGTTCTGCTACGTACGAAACCCCGACCCAGAAGCAGG
TCGTCTACGGATGGTTTAGCACCAGGTTCCCCACGAACGTGCGGTGTGTGACGGGCGAGG
GGGGCGGCCGCGCTTTCCGGCCGTGCCCCGTTTCCCAGGACGAAGGGCTCTCCGCACCGG
ACCCCGGTCCCGACGCGCGACGGGACACGCCGCACGCGGGCGCGCGCGGCGGTCCGCCGG
CGGGGACGGCGGGGGACCGGAGATGGTAGCTTTGCCCCATTGGCTCCTCAGCCAAGCAGG
AGAGGGGTCGTCACCGTCTGTCCCATATTAAAACTGTAGACAAGGACACACAAAACAAAG
ATACACAAAACAGAAACCAACAGATCCAGACACACGCGACCCGCCCGCGTCTTCCACAAG
CAGGCAAAAGAGTCGGACGGTCGTGGAGGGGGAAGCTTTCGCTTCAACAACAGAACTCGG
TCCTCTGACCGACAGAAGGAGACCACCAGGCGTCCCTGGCTCTCCCCACCTCCCGGGGCG
TCCCCCAGGGCGGCAGCCTGTGATCCTCCTAGCACGTCTGCTGATCACAGTCCCCCAGTC
CTTACGGTCTGAGAGGACAGCTGCAAACCGAAAGCGCGCACCACTGAAAACAGACACTCA
GAACAGAGACGCCGGCCGGTACATGCAGACACGTTAAAAAAGAAGGATCCTTTTTACCTC
CAAGTCGGTTCTCGGGTGTTAGGGGTGGCCGCGACAGATCCCGGACGAGCCCCCAAATGT
AAGACCAAGAAAAAGAACCTCCAGGCTCGGAAGAGGCGACTCCCCTTAATCACTCACGAG
AAGCGGTCTTGATGCAAACAGCAAGAGGATTTTTATTCCAAGCGCGCT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               528-800, gnl|bosTau2|chr17 (22514564-22514841)
               

               
               528-800, gnl|Hg17|chr12 (126175348-126175681)
               

               
               528-800, gnl|Mm7|chr3_random (572-290)
               


               
               529-738, gnl|bosTau2|chr1 (72557669-72557463)
               

               
               529-738, gnl|Hg17|chr9 (76416488-76416282)
               

               
               529-738, gnl|Mm7|chr9 (118355333-118355520)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               528-800, gnl|bosTau2|chr17 (22514564-22514841)
               

               
               528-800, gnl|Hg17|chr12 (126175348-126175681)
               

               
               528-800, gnl|Mm7|chr3_random (572-290)
               


               
               529-738, gnl|bosTau2|chr1 (72557669-72557463)
               

               
               529-738, gnl|Hg17|chr9 (76416488-76416282)
               

               
               529-738, gnl|Mm7|chr9 (118355333-118355520)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               pla (2.67344)
               

               
               nco (0.323468)
               

               
               nlu (0.191681)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (2.67344)
               

               
               nco (0.323468)
               

               
               nlu (0.191681)
               

               
               eje (0.0988338)

	528-800, gnl\|bosTau2\|chr17 (22514564-22514841)
	528-800, gnl\|Hg17\|chr12 (126175348-126175681)
	528-800, gnl\|Mm7\|chr3_random (572-290)

	529-738, gnl\|bosTau2\|chr1 (72557669-72557463)
	529-738, gnl\|Hg17\|chr9 (76416488-76416282)
	529-738, gnl\|Mm7\|chr9 (118355333-118355520)