Non-Coding RNA Search

Ss1.1-rplac_2746.5

Sequence:


               
               GAGGCTGGCCCTCAAGTGGGGGGCACGTGGTGGCTTCAATGGACAAATGGAACGGTCCCC
AAGAAGGACCCACCACTGGCAGCATAATGGGGAGCTGGCTGAAGGGGATGCTGAGCCCAA
GGATCCATCCCCTCCTGGGCCCCATTCTGAGGACCTTAAGGTGCCCCCGGGGGTAGTCAG
AAAGTCTCGTCGTGGCCGGAGGAGAAAATACAACCCTACCCGGAACAGCAACAGCTCCCG
CCAGGACGTCACCTTGGACCCCAGCCCCACGACCCGCGCGGCTGTCCCTCTGCCTCCCCG
GGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAGGAGGAAACTGGCCCCATAGCAGCCATA
CCCGGAGCTGGATCTGACCCTGATTGGGGAGAGCTGAGTGCTGAGCCTTGGGAGCCCCTG
CCAGCCACCTGCACCTGTGGACAGTGGGTGGGGGCACTACTCCCCACTCAGAGCACAAAT
GCAACCCCTTCCCCCACAATCCCATCCTGAGCCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCTGGCCCTCAAGTGGGGGGCACGTGGTGGCTTCAATGGACAAATGGAACGGTCCCC
AAGAAGGACCCACCACTGGCAGCATAATGGGGAGCTGGCTGAAGGGGATGCTGAGCCCAA
GGATCCATCCCCTCCTGGGCCCCATTCTGAGGACCTTAAGGTGCCCCCGGGGGTAGTCAG
AAAGTCTCGTCGTGGCCGGAGGAGAAAATACAACCCTACCCGGAACAGCAACAGCTCCCG
CCAGGACGTCACCTTGGACCCCAGCCCCACGACCCGCGCGGCTGTCCCTCTGCCTCCCCG
GGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAGGAGGAAACTGGCCCCATAGCAGCCATA
CCCGGAGCTGGATCTGACCCTGATTGGGGAGAGCTGAGTGCTGAGCCTTGGGAGCCCCTG
CCAGCCACCTGCACCTGTGGACAGTGGGTGGGGGCACTACTCCCCACTCAGAGCACAAAT
GCAACCCCTTCCCCCACAATCCCATCCTGAGCCATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5XJH3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5XJH3_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-516, - strand, RNAz p=0.995157
               

               
               48-163, - strand, RNAz p=0.995483

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-516, - strand, RNAz p=0.995157
               

               
               48-163, - strand, RNAz p=0.995483

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               5-163, gnl|bosTau2|chr5 (34766173-34766015)
               

               
               5-163, gnl|canFam2|chr10 (4601595-4601957)
               

               
               5-163, gnl|dasNov1|scaffold_5444 (48074-47719)
               

               
               5-163, gnl|echTel1|scaffold_315420 (52328-51963)
               

               
               5-163, gnl|hg17|chr12 (56208203-56208565)
               

               
               5-163, gnl|Hg17|chr12 (56208455-56208613)
               

               
               5-163, gnl|loxAfr1|scaffold_6997 (38924-38562)
               

               
               5-163, gnl|mm7|chr10 (126785331-126784969)
               

               
               5-163, gnl|Mm7|chr10 (126785077-126784919)
               

               
               5-163, gnl|oryCun1|scaffold_138337 (23937-23573)
               

               
               5-163, gnl|panTro1|chr10 (57456475-57456837)
               

               
               5-163, gnl|rheMac2|chr11 (54605649-54606011)
               

               
               5-163, gnl|rn3|chr7 (67262060-67261698)
               


               
               278-516, gnl|bosTau2|chr5 (34765447-34765209)
               

               
               278-516, gnl|Hg17|chr12 (56209210-56209448)
               

               
               278-516, gnl|Mm7|chr10 (126784303-126784065)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-163, gnl|bosTau2|chr5 (34766173-34766015)
               

               
               5-163, gnl|canFam2|chr10 (4601595-4601957)
               

               
               5-163, gnl|dasNov1|scaffold_5444 (48074-47719)
               

               
               5-163, gnl|echTel1|scaffold_315420 (52328-51963)
               

               
               5-163, gnl|hg17|chr12 (56208203-56208565)
               

               
               5-163, gnl|Hg17|chr12 (56208455-56208613)
               

               
               5-163, gnl|loxAfr1|scaffold_6997 (38924-38562)
               

               
               5-163, gnl|mm7|chr10 (126785331-126784969)
               

               
               5-163, gnl|Mm7|chr10 (126785077-126784919)
               

               
               5-163, gnl|oryCun1|scaffold_138337 (23937-23573)
               

               
               5-163, gnl|panTro1|chr10 (57456475-57456837)
               

               
               5-163, gnl|rheMac2|chr11 (54605649-54606011)
               

               
               5-163, gnl|rn3|chr7 (67262060-67261698)
               


               
               278-516, gnl|bosTau2|chr5 (34765447-34765209)
               

               
               278-516, gnl|Hg17|chr12 (56209210-56209448)
               

               
               278-516, gnl|Mm7|chr10 (126784303-126784065)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.267344)
               

               
               fty (0.17584)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               fty (0.17584)

	44-516, - strand, RNAz p=0.995157
	48-163, - strand, RNAz p=0.995483

	5-163, gnl\|bosTau2\|chr5 (34766173-34766015)
	5-163, gnl\|canFam2\|chr10 (4601595-4601957)
	5-163, gnl\|dasNov1\|scaffold_5444 (48074-47719)
	5-163, gnl\|echTel1\|scaffold_315420 (52328-51963)
	5-163, gnl\|hg17\|chr12 (56208203-56208565)
	5-163, gnl\|Hg17\|chr12 (56208455-56208613)
	5-163, gnl\|loxAfr1\|scaffold_6997 (38924-38562)
	5-163, gnl\|mm7\|chr10 (126785331-126784969)
	5-163, gnl\|Mm7\|chr10 (126785077-126784919)
	5-163, gnl\|oryCun1\|scaffold_138337 (23937-23573)
	5-163, gnl\|panTro1\|chr10 (57456475-57456837)
	5-163, gnl\|rheMac2\|chr11 (54605649-54606011)
	5-163, gnl\|rn3\|chr7 (67262060-67261698)

	278-516, gnl\|bosTau2\|chr5 (34765447-34765209)
	278-516, gnl\|Hg17\|chr12 (56209210-56209448)
	278-516, gnl\|Mm7\|chr10 (126784303-126784065)