Non-Coding RNA Search

Ss1.1-rplac_2927.5

Sequence:


               
               TAACTATTCTGAGATGGGACCTTTTTGCTCCAGACTATTTTACTTCAAGAAAAATGTTGC
ATTTACCTAAAGTTATAGGCAGGTCGTCCTGTGATTTGAGCCATAATTTAAGGCTTTTTA
AAATGAAAAGTATAGTCCCAAGAAGAAAGAGAAATGGTTCTGTAAAACTTAAGAAAATTA
ATAAGGCAAACGATATGGGAGGTTATAAATTCCCTTTTCTTTTGTAGATCCTAAAAACTC
AGCAGAATCCACCAGGATCTGCCTCCCATTCTATGCTTATTTGATTAACCTTGTCTCTCA
AACTTCAAAAATGGACAATACACTGCTGACTTACCTTAGAAAATCTCCGCATGAGGCACC
CATGCCTTTGGTCGTCTATTTATTGCAAAGCAGGAAATTGTCACCAACAACAGCAAAAAG
TACAATTATAGAGAATAAGTAAGATTTGGGAAAGAAGCATAATGACTTTTTTTTTCCAAA
AGCAATTCTTATTGTCGTAATACTATAGCATTAGCCCCCTTCTCTAAGAGCTAAGTCTTT
GTCAGTCCGTAAATTACATCATTATACAGTTCTAATTATATATAATCTTCAGTTTTTTAT
TTTGTTTCCTTTTTTGTTGCAGAAGGTGAGTAGTTTGTTTTTCATTCCTGATGACACCCT
TGGAAGGTGTTCTTGTAACTTCATATCTGGTAATGCAGACAGACTTAAGTCCACAGGGTT
TTAGGATATTTGACCTCCTCGCATGTCATACCCTCTGTTAGGCATGTTAACATTTGCAGG
AGGGGGAAAAAAATCACTCTTGATGGAAATAAATTTCCACTCAAGCATAAAGCTCTTATT
TACTCAGGCCTTTTAAAAGCAGGTTAAAATGCTCAAAAATGAGAAAGCATTTGGTTTCAT
TTATTTAAGTAATCCGCTGGGATGTTGCCAAATGAGTAAGCATTTAATTTGCTGTTTCTC
AGAAGAATTTGCTACTTCCCTATCAAAGCAACAGCACCCACAACATTAGAGCATGCAGGG
TCTCCTCCTTCCCCCAGGTTTAGGAATATAGCCTGAAGCTCATGGGTAGCTTACCTTGAA
ATGTCTTTGATGTCTCTGTCTCAAAAAGTAATGTAAATTTTATATTCTATTCAATTTTAT
CTGCATTTGTTTTAATATAAAAATGTTTTGCATTACCTACTTCTTTTCCCCAAAAAAATC
TCCAAGTAAAGATGATCTAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACTATTCTGAGATGGGACCTTTTTGCTCCAGACTATTTTACTTCAAGAAAAATGTTGC
ATTTACCTAAAGTTATAGGCAGGTCGTCCTGTGATTTGAGCCATAATTTAAGGCTTTTTA
AAATGAAAAGTATAGTCCCAAGAAGAAAGAGAAATGGTTCTGTAAAACTTAAGAAAATTA
ATAAGGCAAACGATATGGGAGGTTATAAATTCCCTTTTCTTTTGTAGATCCTAAAAACTC
AGCAGAATCCACCAGGATCTGCCTCCCATTCTATGCTTATTTGATTAACCTTGTCTCTCA
AACTTCAAAAATGGACAATACACTGCTGACTTACCTTAGAAAATCTCCGCATGAGGCACC
CATGCCTTTGGTCGTCTATTTATTGCAAAGCAGGAAATTGTCACCAACAACAGCAAAAAG
TACAATTATAGAGAATAAGTAAGATTTGGGAAAGAAGCATAATGACTTTTTTTTTCCAAA
AGCAATTCTTATTGTCGTAATACTATAGCATTAGCCCCCTTCTCTAAGAGCTAAGTCTTT
GTCAGTCCGTAAATTACATCATTATACAGTTCTAATTATATATAATCTTCAGTTTTTTAT
TTTGTTTCCTTTTTTGTTGCAGAAGGTGAGTAGTTTGTTTTTCATTCCTGATGACACCCT
TGGAAGGTGTTCTTGTAACTTCATATCTGGTAATGCAGACAGACTTAAGTCCACAGGGTT
TTAGGATATTTGACCTCCTCGCATGTCATACCCTCTGTTAGGCATGTTAACATTTGCAGG
AGGGGGAAAAAAATCACTCTTGATGGAAATAAATTTCCACTCAAGCATAAAGCTCTTATT
TACTCAGGCCTTTTAAAAGCAGGTTAAAATGCTCAAAAATGAGAAAGCATTTGGTTTCAT
TTATTTAAGTAATCCGCTGGGATGTTGCCAAATGAGTAAGCATTTAATTTGCTGTTTCTC
AGAAGAATTTGCTACTTCCCTATCAAAGCAACAGCACCCACAACATTAGAGCATGCAGGG
TCTCCTCCTTCCCCCAGGTTTAGGAATATAGCCTGAAGCTCATGGGTAGCTTACCTTGAA
ATGTCTTTGATGTCTCTGTCTCAAAAAGTAATGTAAATTTTATATTCTATTCAATTTTAT
CTGCATTTGTTTTAATATAAAAATGTTTTGCATTACCTACTTCTTTTCCCCAAAAAAATC
TCCAAGTAAAGATGATCTAGGAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               9-346, gnl|bosTau2|chr15 (48735669-48736004)
               

               
               9-346, gnl|Hg17|chr11 (47596760-47596403)
               

               
               9-346, gnl|Mm7|chr2 (90716184-90716500)
               


               
               380-1224, gnl|bosTau2|chr15 (48736013-48736871)
               

               
               380-1224, gnl|Hg17|chr11 (47596376-47595448)
               

               
               380-1224, gnl|Mm7|chr2 (90716509-90717353)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-346, gnl|bosTau2|chr15 (48735669-48736004)
               

               
               9-346, gnl|Hg17|chr11 (47596760-47596403)
               

               
               9-346, gnl|Mm7|chr2 (90716184-90716500)
               


               
               380-1224, gnl|bosTau2|chr15 (48736013-48736871)
               

               
               380-1224, gnl|Hg17|chr11 (47596376-47595448)
               

               
               380-1224, gnl|Mm7|chr2 (90716509-90717353)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               fat (0.442282)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.442282)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	9-346, gnl\|bosTau2\|chr15 (48735669-48736004)
	9-346, gnl\|Hg17\|chr11 (47596760-47596403)
	9-346, gnl\|Mm7\|chr2 (90716184-90716500)

	380-1224, gnl\|bosTau2\|chr15 (48736013-48736871)
	380-1224, gnl\|Hg17\|chr11 (47596376-47595448)
	380-1224, gnl\|Mm7\|chr2 (90716509-90717353)

	fat (0.442282)
	hea (0.408998)
	kid (0.389206)
	lyg (0.266205)
	bla (0.248694)
	nms (0.213858)
	jej (0.197844)
	aor (0.195274)
	sag (0.182715)
	fty (0.17584)
	rec (0.17307)
	fco (0.157208)
	isp (0.150376)
	hyp (0.142837)
	pty (0.142714)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	thg (0.126791)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)