Ss1.1-rplac_2992.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGATCCTTGGCAGAGGTGCTTCCAGACCACCAATGGCTACCTGTCCGACTCCAGGTCG TGCTCCAGCAACTATAACGTGGCAGCCCTAGCCACCTCATCCCTTGTGGGAGTGGTGCAA AGCATCAAGGACCACATCACAAAGCCCACGGCCATGGCACGTGGCCGCGTGGCCCACCTC ATTGAGTGGAAGGGTTGGAGTGCCCAGCGTTCGGGCTGGGAGCTGTCCCCGGCCGAGGAC GAGCATTACTGCTGCCTCCCAGACGAGCTGCGGGAGGCCCGCTTTGCCGCAGGGGTTGCC GAGCAGTTTGCCATCACGGAGGCCACGCTGAGCGCCTGGTCCTCGCTGGACGATGAGGAG CTGAACCCGGAGAACAGCCCCCAGGACGTGGTCCAGCTTCAGGACCTGGAGAGCATCTAC CTGCAGGACAGTCTTCTGAGTGTCCCCTCGCAGGATGACAGTCTTCTGGCCTTCTCCTCC TCTGGTCTCTCCCCCGATGGCTGGCCCTCACCTGAAGAGCCCCCCATCACAGCTGTGGGC CCGCAGCCCCCCAGTCCTGAACAGCAGCACAGGCAGCGGCTGCCGGGGGCCCCGGGACCC GAGGGTGGGGCCCACTTGCAGGGCTCCCTCCCCTCAGTGGACAGTGGCTCCCTCTCGGAG GAAGAGGACGAGGTGTTCTATAACTGAGGTGGGGACCAGAGCCTGCTGGCACCGTGACCT GGCCTGGTGGGCAGCCCAGGTGTATCCGGACACCGGGGTCTGGCTGTGCATCTCTAGACC CCTCAGGGCAGGCCCAGGGTGGGTGCAGCGGGGCTGGGGGCCAGCATTCCTTGTGGACCA CTCCGTGCCTCCGTGGCCCTGTCCCTCGCAGTGGGAGCCATCATCCCCTTCTCCCTCTTT ATGTGGCTCAGGAGGGCACCCCCCTCTGCAGAGTTTCTGCCATCAGCGAGCTCAAGAGCT CTCAGTGGACACCGGGGCAAGCCGCCCAGAGGAGCCAATAGCCAGACTCCCAGGAAGACA GACACAGAAGGGCCTGCGAGACCTGCTGGGAGTGGGGCCCGGGGACCCTGCCTTGAGCCC AGGGCTCAGTCCTTCCCCCTCTCCCCCTGAGCTTCTGCCCCCATCAGAGGGGGACTGCCT CTTCTGGTAGCTAACGTCTGCCCCTTAGCGCTCTTCATGGGGATTCTGTGTCTGGAGTGT CTGTAGGTCCCTCACTCTCTGAACCCGCTCCCTGGTGCCCTCCTCCCCCTCCTCGCTCTC CCCTGCCATCTCCCTGATGCCATCTCCCTGAAGGTCGTCTGAAGACATTAAAGTGGTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGATCCTTGGCAGAGGTGCTTCCAGACCACCAATGGCTACCTGTCCGACTCCAGGTCG TGCTCCAGCAACTATAACGTGGCAGCCCTAGCCACCTCATCCCTTGTGGGAGTGGTGCAA AGCATCAAGGACCACATCACAAAGCCCACGGCCATGGCACGTGGCCGCGTGGCCCACCTC ATTGAGTGGAAGGGTTGGAGTGCCCAGCGTTCGGGCTGGGAGCTGTCCCCGGCCGAGGAC GAGCATTACTGCTGCCTCCCAGACGAGCTGCGGGAGGCCCGCTTTGCCGCAGGGGTTGCC GAGCAGTTTGCCATCACGGAGGCCACGCTGAGCGCCTGGTCCTCGCTGGACGATGAGGAG CTGAACCCGGAGAACAGCCCCCAGGACGTGGTCCAGCTTCAGGACCTGGAGAGCATCTAC CTGCAGGACAGTCTTCTGAGTGTCCCCTCGCAGGATGACAGTCTTCTGGCCTTCTCCTCC TCTGGTCTCTCCCCCGATGGCTGGCCCTCACCTGAAGAGCCCCCCATCACAGCTGTGGGC CCGCAGCCCCCCAGTCCTGAACAGCAGCACAGGCAGCGGCTGCCGGGGGCCCCGGGACCC GAGGGTGGGGCCCACTTGCAGGGCTCCCTCCCCTCAGTGGACAGTGGCTCCCTCTCGGAG GAAGAGGACGAGGTGTTCTATAACTGAGGTGGGGACCAGAGCCTGCTGGCACCGTGACCT GGCCTGGTGGGCAGCCCAGGTGTATCCGGACACCGGGGTCTGGCTGTGCATCTCTAGACC CCTCAGGGCAGGCCCAGGGTGGGTGCAGCGGGGCTGGGGGCCAGCATTCCTTGTGGACCA CTCCGTGCCTCCGTGGCCCTGTCCCTCGCAGTGGGAGCCATCATCCCCTTCTCCCTCTTT ATGTGGCTCAGGAGGGCACCCCCCTCTGCAGAGTTTCTGCCATCAGCGAGCTCAAGAGCT CTCAGTGGACACCGGGGCAAGCCGCCCAGAGGAGCCAATAGCCAGACTCCCAGGAAGACA GACACAGAAGGGCCTGCGAGACCTGCTGGGAGTGGGGCCCGGGGACCCTGCCTTGAGCCC AGGGCTCAGTCCTTCCCCCTCTCCCCCTGAGCTTCTGCCCCCATCAGAGGGGGACTGCCT CTTCTGGTAGCTAACGTCTGCCCCTTAGCGCTCTTCATGGGGATTCTGTGTCTGGAGTGT CTGTAGGTCCCTCACTCTCTGAACCCGCTCCCTGGTGCCCTCCTCCCCCTCCTCGCTCTC CCCTGCCATCTCCCTGATGCCATCTCCCTGAAGGTCGTCTGAAGACATTAAAGTGGTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 696-811, - strand, RNAz p=0.898514 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 696-811, - strand, RNAz p=0.898514 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 109-293, gnl|bosTau2|chr2 (86220543-86220730) | |
| 109-293, gnl|Hg17|chr1 (16131853-16131669) | |
| 109-293, gnl|Mm7|chr4 (140760767-140760951) | |
| 403-526, gnl|bosTau2|chr2 (86222459-86222570) | |
| 403-526, gnl|canFam2|chr2 (84507539-84507289) | |
| 403-526, gnl|dasNov1|scaffold_201182 (3568-3802) | |
| 403-526, gnl|hg17|chr1 (16107058-16107303) | |
| 403-526, gnl|Hg17|chr1 (16130519-16130369) | |
| 403-526, gnl|loxAfr1|scaffold_61349 (4805-5040) | |
| 403-526, gnl|mm7|chr4 (140762008-140761789) | |
| 403-526, gnl|Mm7|chr4 (140761828-140761951) | |
| 403-526, gnl|monDom2|scaffold_109 (3056212-3055931) | |
| 403-526, gnl|oryCun1|scaffold_205945 (40422-40203) | |
| 403-526, gnl|panTro1|chr1_random (27242150-27242395) | |
| 403-526, gnl|rheMac2|chr1 (18840367-18840620) | |
| 403-526, gnl|rn3|chr5 (160283532-160283316) | |
| 545-1004, gnl|bosTau2|chr2 (86222562-86222996) | |
| 545-1004, gnl|canFam2|chr2 (84507991-84507639) | |
| 545-1004, gnl|dasNov1|scaffold_201182 (3174-3491) | |
| 545-1004, gnl|hg17|chr1 (16106605-16106963) | |
| 545-1004, gnl|Hg17|chr1 (16130377-16129894) | |
| 545-1004, gnl|loxAfr1|scaffold_61349 (4379-4719) | |
| 545-1004, gnl|mm7|chr4 (140762357-140762098) | |
| 545-1004, gnl|monDom2|scaffold_109 (3056894-3056316) | |
| 545-1004, gnl|oryCun1|scaffold_205945 (40875-40520) | |
| 545-1004, gnl|panTro1|chr1_random (27241696-27242055) | |
| 545-1004, gnl|rheMac2|chr1 (18839914-18840272) | |
| 545-1004, gnl|rn3|chr5 (160283890-160283622) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 109-293, gnl|bosTau2|chr2 (86220543-86220730) | |
| 109-293, gnl|Hg17|chr1 (16131853-16131669) | |
| 109-293, gnl|Mm7|chr4 (140760767-140760951) | |
| 403-526, gnl|bosTau2|chr2 (86222459-86222570) | |
| 403-526, gnl|canFam2|chr2 (84507539-84507289) | |
| 403-526, gnl|dasNov1|scaffold_201182 (3568-3802) | |
| 403-526, gnl|hg17|chr1 (16107058-16107303) | |
| 403-526, gnl|Hg17|chr1 (16130519-16130369) | |
| 403-526, gnl|loxAfr1|scaffold_61349 (4805-5040) | |
| 403-526, gnl|mm7|chr4 (140762008-140761789) | |
| 403-526, gnl|Mm7|chr4 (140761828-140761951) | |
| 403-526, gnl|monDom2|scaffold_109 (3056212-3055931) | |
| 403-526, gnl|oryCun1|scaffold_205945 (40422-40203) | |
| 403-526, gnl|panTro1|chr1_random (27242150-27242395) | |
| 403-526, gnl|rheMac2|chr1 (18840367-18840620) | |
| 403-526, gnl|rn3|chr5 (160283532-160283316) | |
| 545-1004, gnl|bosTau2|chr2 (86222562-86222996) | |
| 545-1004, gnl|canFam2|chr2 (84507991-84507639) | |
| 545-1004, gnl|dasNov1|scaffold_201182 (3174-3491) | |
| 545-1004, gnl|hg17|chr1 (16106605-16106963) | |
| 545-1004, gnl|Hg17|chr1 (16130377-16129894) | |
| 545-1004, gnl|loxAfr1|scaffold_61349 (4379-4719) | |
| 545-1004, gnl|mm7|chr4 (140762357-140762098) | |
| 545-1004, gnl|monDom2|scaffold_109 (3056894-3056316) | |
| 545-1004, gnl|oryCun1|scaffold_205945 (40875-40520) | |
| 545-1004, gnl|panTro1|chr1_random (27241696-27242055) | |
| 545-1004, gnl|rheMac2|chr1 (18839914-18840272) | |
| 545-1004, gnl|rn3|chr5 (160283890-160283622) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cag (0.151194) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ebs (0.118301) |