Non-Coding RNA Search

Ss1.1-rplac_3029.5

Sequence:


               
               CAGATAATGATTATAATGCTGATAATAACTGAAGAATGAGAAAGAGAAAGAGACACTGGC
ATTTCGCTTTCCTGAGGGGGAATCTCTTTCTCCAGTGGAATCTACAATTTTTTTTAAAAA
AACTTTTCTCTAAGAAATGGTAAAGACTGCCCATTCTCCCGCCAGCCCCACCAGACCGTT
AAGTGACAAACTCTAGAGTCAAACGTCAACCCCCAAATACGCAATTTCAGATAAGTTACG
CATTTACTGAAATCTTGTAAGTATTTATGTGGCCGTTATATTTTAGGACACTAGGTTATG
TGATAATAATCGAACGTTGGTTACAAATGCAAGAGGCTGTTGTAAACATCTGTTTGTCCT
TGGGTCACCATTGCCATCGCCTTTGCATGTTAAGTGACTGCTCAGGTAAATCTTAGTGAA
GTTCCTGCCCTTGTTGTATATTCTGCAAAACATGTCATGAGTAGATTTAGAAAGGAAAGG
AGAAGAAGGTACTGAAATAAGAATCTTGGACTATCTGGTATGAAGGGAGAAAGGGAGAGA
AAGCTCTTCCGAGGATCGTCTGTCTTGGTGGTAAATACAACCAGCTGAGTGAGCCTTTGA
GGCTACAGGGGAACCCAGGTTGGGAATGTCCTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATAATGATTATAATGCTGATAATAACTGAAGAATGAGAAAGAGAAAGAGACACTGGC
ATTTCGCTTTCCTGAGGGGGAATCTCTTTCTCCAGTGGAATCTACAATTTTTTTTAAAAA
AACTTTTCTCTAAGAAATGGTAAAGACTGCCCATTCTCCCGCCAGCCCCACCAGACCGTT
AAGTGACAAACTCTAGAGTCAAACGTCAACCCCCAAATACGCAATTTCAGATAAGTTACG
CATTTACTGAAATCTTGTAAGTATTTATGTGGCCGTTATATTTTAGGACACTAGGTTATG
TGATAATAATCGAACGTTGGTTACAAATGCAAGAGGCTGTTGTAAACATCTGTTTGTCCT
TGGGTCACCATTGCCATCGCCTTTGCATGTTAAGTGACTGCTCAGGTAAATCTTAGTGAA
GTTCCTGCCCTTGTTGTATATTCTGCAAAACATGTCATGAGTAGATTTAGAAAGGAAAGG
AGAAGAAGGTACTGAAATAAGAATCTTGGACTATCTGGTATGAAGGGAGAAAGGGAGAGA
AAGCTCTTCCGAGGATCGTCTGTCTTGGTGGTAAATACAACCAGCTGAGTGAGCCTTTGA
GGCTACAGGGGAACCCAGGTTGGGAATGTCCTTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-113, - strand, RNAz p=0.977308

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, - strand, RNAz p=0.977308

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr4 (40144144-40144790)
               

               
               1-636, gnl|Hg17|chr7 (27010995-27010375)
               

               
               1-636, gnl|Mm7|chr6 (52222211-52221620)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr4 (40144144-40144790)
               

               
               1-636, gnl|Hg17|chr7 (27010995-27010375)
               

               
               1-636, gnl|Mm7|chr6 (52222211-52221620)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pro (0.512033)
               

               
               rec (0.17307)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               rec (0.17307)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

	1-636, gnl\|bosTau2\|chr4 (40144144-40144790)
	1-636, gnl\|Hg17\|chr7 (27010995-27010375)
	1-636, gnl\|Mm7\|chr6 (52222211-52221620)