Ss1.1-rplac_3079.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTGCGGAGGCGGTGCGGAGCGTTGTTTCGGTCCTCAGCGGCTGGGGAACCACTGCGTGG TGTGAGGCTGCGGCGGAGCCTCTAAGAAGGCGCGAGAGGGTGGCAGCTTCGCTTGAAGCA CGTCGAGCGACGACAGCAGCCAGGAGTCATGAGCGACAGCGGCGAGCAGAACTACGGCGA GCGGGAATCCCGTTCTGCTTCCAGAAGTGGAAGTGCTCATGGATCTGGGAAATCTGCAAG GCATACCCCTGCAAGGTCTCGCTCCAAGGAAGATTCCAGGCGTTCCAGATCAAAGTCCAG GTCCAGATCTGAATCTAGGTCTAGATCCAGAAGAAGTTCTCGAAGGCATTATACAAGGTC ACGATCTCGGTCCCGCTCCCATAGAAGATCCCGTAGCAGATCTTACAGTAGAGATTATCG AAGACGGCATAGCCACAGTCACTCTCCCATGTCGACTCGAAGGCGTCATGTTGGGAATCG GGCAAATCCTGATCCCAACTGTTGTCTTGGAGTATTTGGATTGAGCTTGTACACTACAGA AAGAGATCTAAGAGAAGTGTTCTCTAAATATGGCCCAATTGCTGATGTGTCTATCGTATA TGACCAGCAGTCTAGACGTTCAAGAGGATTTGCCTTTGTATACTTTGAAAATGTAGATGA TGCCAAGGAAGCGAAAGAACGTGCCAATGGAATGGAGCTTGATGGACGTAGGATCAGAGT TGATTTCTCTATAACAAAAAGACCACATACCCCAACACCAGGAATTTACATGGGGAGACC TACCTATGGCAGCTCGCGCCGTCGGGATTACTATGACAGAGGATATGATCGAGGCTATGA TGATCGGGACTACTATAGTAGATCATATAGAGGAGGAGGTGGAGGAGGAGGAGGATGGAG AGCTGCTCAGGACAGGGATCAGATATACAGAAGACGGTCACCTTCTCCTTACTATAGTCG TGGAGGTTACAGATCACGTTCCAGATCTCGATCATACTCACCTCGTCGTTATTAAGCATG AAGTTGAAGACTTTCTGAAACCTGCCCTAGAGTTGGGATATTGTTTGTGGACAATATTTT TTATTGTCTCCTGTTTAAAAAGTGAACAGTGCCTAGTGAAGTTAGGTGACTTTTACACCT TTTATGATGACTACTTTTGGTGGAGTTGAAATGCTGTTTTCATTCTGCATTTGTGTAGTT CGGTGCTTTGTTCAAAGTTAAGTGTTTTCAGAAAAGTATGTTTTGCATGTATTTTTTTAC AGTCTAAATTTTGACTGCTGAGAAGTTTCTATTGTACAAAACTTCATTTAAAAGGTTTTT CTACTGAATCCAGGGTATTCTGAAGATCGAAGCCTGTGTGTAAAATGCTACCAAATGGCA AAAAGCAACAATAAAGTTTCGTTTTTACTTTTCTTTCTAACATATCAGTGCTTAGCAGAA CTGTTCAGATTAGGTCGTCAGTAGTAAATTCAAGACAAAAAAATGCCCGTTTTCCTCCAG TCCATGAAACATACCATATACTCAATATACCTGCAATTAAGTGTTAAAATTATGCTCTGT AACTCTCTACTGCTAGTATTAGAACTAAAGATCTCTCAATACAGCAAATGCTTAATACTT ATATAAATGTGGATTTGTCGGCCTTTATGTAATCTGTATTATATATAGCAGGGAATAAGA TAAGAGTTATACAATGTATGCCTTTAAAAGGCTATTTCTTAAAGCTGTTACAAGGGGATA ATGGTATTTCAACTAAGTTATCAGCAAGTGACAATACATTCCACCATAAATGTACTCTTG TTCTTCTAGCTTTTAGACTATATGGAAAGACTGGGTGCTTCAGAGCTTGAGAAAAGAGAA GGGAACACTACACCTGTGTTGTGTATGAACTGAAGACTTTGCCTGTTCATTTTTTAAATA TTATTTTCAGGTCCTTTGCTTACCAAAGGAGGCCCTATTTCACTCAAATGTTTTGAGAAC TGTGTTTAAATAAACTCAAGTGAAAAAAGAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTGCGGAGGCGGTGCGGAGCGTTGTTTCGGTCCTCAGCGGCTGGGGAACCACTGCGTGG TGTGAGGCTGCGGCGGAGCCTCTAAGAAGGCGCGAGAGGGTGGCAGCTTCGCTTGAAGCA CGTCGAGCGACGACAGCAGCCAGGAGTCATGAGCGACAGCGGCGAGCAGAACTACGGCGA GCGGGAATCCCGTTCTGCTTCCAGAAGTGGAAGTGCTCATGGATCTGGGAAATCTGCAAG GCATACCCCTGCAAGGTCTCGCTCCAAGGAAGATTCCAGGCGTTCCAGATCAAAGTCCAG GTCCAGATCTGAATCTAGGTCTAGATCCAGAAGAAGTTCTCGAAGGCATTATACAAGGTC ACGATCTCGGTCCCGCTCCCATAGAAGATCCCGTAGCAGATCTTACAGTAGAGATTATCG AAGACGGCATAGCCACAGTCACTCTCCCATGTCGACTCGAAGGCGTCATGTTGGGAATCG GGCAAATCCTGATCCCAACTGTTGTCTTGGAGTATTTGGATTGAGCTTGTACACTACAGA AAGAGATCTAAGAGAAGTGTTCTCTAAATATGGCCCAATTGCTGATGTGTCTATCGTATA TGACCAGCAGTCTAGACGTTCAAGAGGATTTGCCTTTGTATACTTTGAAAATGTAGATGA TGCCAAGGAAGCGAAAGAACGTGCCAATGGAATGGAGCTTGATGGACGTAGGATCAGAGT TGATTTCTCTATAACAAAAAGACCACATACCCCAACACCAGGAATTTACATGGGGAGACC TACCTATGGCAGCTCGCGCCGTCGGGATTACTATGACAGAGGATATGATCGAGGCTATGA TGATCGGGACTACTATAGTAGATCATATAGAGGAGGAGGTGGAGGAGGAGGAGGATGGAG AGCTGCTCAGGACAGGGATCAGATATACAGAAGACGGTCACCTTCTCCTTACTATAGTCG TGGAGGTTACAGATCACGTTCCAGATCTCGATCATACTCACCTCGTCGTTATTAAGCATG AAGTTGAAGACTTTCTGAAACCTGCCCTAGAGTTGGGATATTGTTTGTGGACAATATTTT TTATTGTCTCCTGTTTAAAAAGTGAACAGTGCCTAGTGAAGTTAGGTGACTTTTACACCT TTTATGATGACTACTTTTGGTGGAGTTGAAATGCTGTTTTCATTCTGCATTTGTGTAGTT CGGTGCTTTGTTCAAAGTTAAGTGTTTTCAGAAAAGTATGTTTTGCATGTATTTTTTTAC AGTCTAAATTTTGACTGCTGAGAAGTTTCTATTGTACAAAACTTCATTTAAAAGGTTTTT CTACTGAATCCAGGGTATTCTGAAGATCGAAGCCTGTGTGTAAAATGCTACCAAATGGCA AAAAGCAACAATAAAGTTTCGTTTTTACTTTTCTTTCTAACATATCAGTGCTTAGCAGAA CTGTTCAGATTAGGTCGTCAGTAGTAAATTCAAGACAAAAAAATGCCCGTTTTCCTCCAG TCCATGAAACATACCATATACTCAATATACCTGCAATTAAGTGTTAAAATTATGCTCTGT AACTCTCTACTGCTAGTATTAGAACTAAAGATCTCTCAATACAGCAAATGCTTAATACTT ATATAAATGTGGATTTGTCGGCCTTTATGTAATCTGTATTATATATAGCAGGGAATAAGA TAAGAGTTATACAATGTATGCCTTTAAAAGGCTATTTCTTAAAGCTGTTACAAGGGGATA ATGGTATTTCAACTAAGTTATCAGCAAGTGACAATACATTCCACCATAAATGTACTCTTG TTCTTCTAGCTTTTAGACTATATGGAAAGACTGGGTGCTTCAGAGCTTGAGAAAAGAGAA GGGAACACTACACCTGTGTTGTGTATGAACTGAAGACTTTGCCTGTTCATTTTTTAAATA TTATTTTCAGGTCCTTTGCTTACCAAAGGAGGCCCTATTTCACTCAAATGTTTTGAGAAC TGTGTTTAAATAAACTCAAGTGAAAAAAGAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1044-1362, - strand, RNAz p=0.924351 | |
| 1211-2015, - strand, RNAz p=0.986895 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1044-1362, - strand, RNAz p=0.924351 | |
| 1211-2015, - strand, RNAz p=0.986895 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 184-320, gnl|bosTau2|chr1 (54423543-54423407) | |
| 184-320, gnl|Hg17|chr3 (187127225-187127089) | |
| 184-320, gnl|Mm7|chr16 (21906414-21906278) | |
| 481-671, gnl|bosTau2|chr1 (54420870-54420680) | |
| 481-671, gnl|canFam2|chr34 (21651148-21651341) | |
| 481-671, gnl|danRer3|chr7 (30652434-30652245) | |
| 481-671, gnl|dasNov1|scaffold_74350 (1516-1333) | |
| 481-671, gnl|echTel1|scaffold_286604 (29500-29683) | |
| 481-671, gnl|fr1|chrUn (12942908-12943101) | |
| 481-671, gnl|galGal2|chr9 (9200229-9200422) | |
| 481-671, gnl|hg17|chr3 (187124281-187124474) | |
| 481-671, gnl|Hg17|chr3 (187124475-187124285) | |
| 481-671, gnl|loxAfr1|scaffold_5051 (1124-952) | |
| 481-671, gnl|mm7|chr16 (21903898-21904091) | |
| 481-671, gnl|Mm7|chr16 (21904092-21903902) | |
| 481-671, gnl|monDom2|scaffold_77 (116604-116787) | |
| 481-671, gnl|oryCun1|scaffold_179223 (38623-38816) | |
| 481-671, gnl|panTro1|chr2 (191151084-191151277) | |
| 481-671, gnl|rheMac2|chr2 (100715824-100715631) | |
| 481-671, gnl|rn3|chr11 (81097083-81096890) | |
| 481-671, gnl|tetNig1|chr10 (8363925-8363732) | |
| 481-671, gnl|xenTro1|scaffold_48 (2262664-2262857) | |
| 1005-2015, gnl|bosTau2|chr1 (54415716-54414707) | |
| 1005-2015, gnl|Hg17|chr3 (187118215-187117234) | |
| 1005-2015, gnl|Mm7|chr16 (21898162-21897183) | |
| 1092-1333, gnl|bosTau2|chr12 (14935822-14935580) | |
| 1092-1333, gnl|Hg17|chr3 (187118133-187117892) | |
| 1092-1333, gnl|Mm7|chr16 (21898074-21897833) | |
| 1875-1989, gnl|bosTau2|chr12 (14935943-14936053) | |
| 1875-1989, gnl|Hg17|chr3 (187117389-187117257) | |
| 1875-1989, gnl|Mm7|chr16 (21897330-21897200) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 184-320, gnl|bosTau2|chr1 (54423543-54423407) | |
| 184-320, gnl|Hg17|chr3 (187127225-187127089) | |
| 184-320, gnl|Mm7|chr16 (21906414-21906278) | |
| 481-671, gnl|bosTau2|chr1 (54420870-54420680) | |
| 481-671, gnl|canFam2|chr34 (21651148-21651341) | |
| 481-671, gnl|danRer3|chr7 (30652434-30652245) | |
| 481-671, gnl|dasNov1|scaffold_74350 (1516-1333) | |
| 481-671, gnl|echTel1|scaffold_286604 (29500-29683) | |
| 481-671, gnl|fr1|chrUn (12942908-12943101) | |
| 481-671, gnl|galGal2|chr9 (9200229-9200422) | |
| 481-671, gnl|hg17|chr3 (187124281-187124474) | |
| 481-671, gnl|Hg17|chr3 (187124475-187124285) | |
| 481-671, gnl|loxAfr1|scaffold_5051 (1124-952) | |
| 481-671, gnl|mm7|chr16 (21903898-21904091) | |
| 481-671, gnl|Mm7|chr16 (21904092-21903902) | |
| 481-671, gnl|monDom2|scaffold_77 (116604-116787) | |
| 481-671, gnl|oryCun1|scaffold_179223 (38623-38816) | |
| 481-671, gnl|panTro1|chr2 (191151084-191151277) | |
| 481-671, gnl|rheMac2|chr2 (100715824-100715631) | |
| 481-671, gnl|rn3|chr11 (81097083-81096890) | |
| 481-671, gnl|tetNig1|chr10 (8363925-8363732) | |
| 481-671, gnl|xenTro1|scaffold_48 (2262664-2262857) | |
| 1005-2015, gnl|bosTau2|chr1 (54415716-54414707) | |
| 1005-2015, gnl|Hg17|chr3 (187118215-187117234) | |
| 1005-2015, gnl|Mm7|chr16 (21898162-21897183) | |
| 1092-1333, gnl|bosTau2|chr12 (14935822-14935580) | |
| 1092-1333, gnl|Hg17|chr3 (187118133-187117892) | |
| 1092-1333, gnl|Mm7|chr16 (21898074-21897833) | |
| 1875-1989, gnl|bosTau2|chr12 (14935943-14936053) | |
| 1875-1989, gnl|Hg17|chr3 (187117389-187117257) | |
| 1875-1989, gnl|Mm7|chr16 (21897330-21897200) |
| Expressed library(ies): 60 entry(ies) | More info |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
| thg (1.77507) | |
| lin (1.16482) | |
| ret (1.02987) | |
| liv (0.877706) | |
| sag (0.730861) | |
| sin (0.69979) | |
| cbl (0.573987) | |
| fce (0.543183) | |
| lyg (0.532411) | |
| rec (0.519211) | |
| pro (0.512033) | |
| sug (0.509165) | |
| tra (0.492368) | |
| mga (0.480615) | |
| med (0.465008) | |
| isp (0.451128) | |
| aor (0.390549) | |
| kid (0.389206) | |
| ova (0.387397) | |
| gul (0.355177) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| eje (0.296501) | |
| fat (0.294855) | |
| cte (0.29274) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| ute (0.265569) | |
| clu (0.239292) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ski (0.146735) | |
| csk (0.140746) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (1.77507) | |
| lin (1.16482) | |
| ret (1.02987) | |
| liv (0.877706) | |
| sag (0.730861) | |
| sin (0.69979) | |
| cbl (0.573987) | |
| fce (0.543183) | |
| lyg (0.532411) | |
| rec (0.519211) | |
| pro (0.512033) | |
| sug (0.509165) | |
| tra (0.492368) | |
| mga (0.480615) | |
| med (0.465008) | |
| isp (0.451128) | |
| aor (0.390549) | |
| kid (0.389206) | |
| ova (0.387397) | |
| gul (0.355177) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| eje (0.296501) | |
| fat (0.294855) | |
| cte (0.29274) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| ute (0.265569) | |
| clu (0.239292) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ski (0.146735) | |
| csk (0.140746) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |