Non-Coding RNA Search

Ss1.1-rplac_3135.5

Sequence:


               
               GATTCACTGTGGTCAGTTCTGAACCCAAGCAATCTTTTCTGAGTGGATTTGCAAGGGATC
TGCAGACTCACCAGCCACCATCCTGCTTGCCAGCCTCTTCCTTACAGGCAGCTGCTTCCA
AACACAACAAACTCTTTAAGGAAAGGGTCCATCCTTTGTCATCTGCTGGTCAAAGGGACC
TTGGTGCCAGGAAGATGATCTCAAAATGTCCCCTTCCTCTGCCCATCCAGGGTGAAGAAA
AGGAAGCAGAAGAAGAATTCTTTATATAGCATAAGACAACTGTGGTTTTCTAAAACATAA
GATCAAATAGAATGTTCTAGAAATGGAGCATTGACCCAGAATCAGCCTGTTTCTAGTTCA
TCTGAGGGGGCCTGAATGCTGGCCACACATGGGTTTGTACTGCTTTTATTTCAAATGTTC
AAAGTCTAGCGGTGCTGGTGAGTGGGTGTTCATTTACCATCATGGTCATAAGGGAACAGC
CAACACATGGGGTAAAAGCCCAGCGCCTCCTGTTCTTGGAGACACACTAACCCAGCTGGG
CGTGTGGAGTTCAACACCTTATTAGGATAATTGTGTTGTATGCAAATGAGTCGAATGTGT
ATGCAGTGCTGATTAGCGTCTGTAATTGGTTTTAATTTTTCCTTGGGTTGCATAGCTCAT
CCCCCCGGAGAGCATGGACTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCACTGTGGTCAGTTCTGAACCCAAGCAATCTTTTCTGAGTGGATTTGCAAGGGATC
TGCAGACTCACCAGCCACCATCCTGCTTGCCAGCCTCTTCCTTACAGGCAGCTGCTTCCA
AACACAACAAACTCTTTAAGGAAAGGGTCCATCCTTTGTCATCTGCTGGTCAAAGGGACC
TTGGTGCCAGGAAGATGATCTCAAAATGTCCCCTTCCTCTGCCCATCCAGGGTGAAGAAA
AGGAAGCAGAAGAAGAATTCTTTATATAGCATAAGACAACTGTGGTTTTCTAAAACATAA
GATCAAATAGAATGTTCTAGAAATGGAGCATTGACCCAGAATCAGCCTGTTTCTAGTTCA
TCTGAGGGGGCCTGAATGCTGGCCACACATGGGTTTGTACTGCTTTTATTTCAAATGTTC
AAAGTCTAGCGGTGCTGGTGAGTGGGTGTTCATTTACCATCATGGTCATAAGGGAACAGC
CAACACATGGGGTAAAAGCCCAGCGCCTCCTGTTCTTGGAGACACACTAACCCAGCTGGG
CGTGTGGAGTTCAACACCTTATTAGGATAATTGTGTTGTATGCAAATGAGTCGAATGTGT
ATGCAGTGCTGATTAGCGTCTGTAATTGGTTTTAATTTTTCCTTGGGTTGCATAGCTCAT
CCCCCCGGAGAGCATGGACTCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-277, - strand, RNAz p=0.633328

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-277, - strand, RNAz p=0.633328

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               166-255, - strand, RNAmicro p=0.969328

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               166-255, - strand, RNAmicro p=0.969328

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-684, gnl|bosTau2|chr2 (68683756-68683059)
               

               
               1-684, gnl|Hg17|chr2 (225070066-225069376)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr2 (68683756-68683059)
               

               
               1-684, gnl|Hg17|chr2 (225070066-225069376)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-684, gnl\|bosTau2\|chr2 (68683756-68683059)
	1-684, gnl\|Hg17\|chr2 (225070066-225069376)