Non-Coding RNA Search

Ss1.1-rplac_3203.5

Sequence:


               
               CCCCGGGGCCCCCGTGACAGCGACCGGGCGCAGCTGGACGAGGAGGTTGAGTTGTTAGAA
GAAAAATTGAGAGAAAAATCAGACGGGCTTAATGAACTGATTGTAAAGAAAGAACTGGCA
GATAGACAAGTGTTGACCCAAGAAGAGGAGATTAAGCGTCTGGAGGAGGCAAACGCCAGC
AGCAGGCGAGAACTGGCGCAGCTCCAGGGAGAACTGGAGAGGCTGCGAAAGGCCCTGAGG
GACCTGGAACAGGATAAGGAGGCGTCGCAGGGGCAGCAGAGGAGTAACTTGCTCTTGGTG
TCTACACTGCAGTCTAAGCTCGACGAGGGCAAATGCCCGGTGCCTCCTGTGGGCGGCTCT
TCCGAGGGTCCCGAAGTCCAGCTGGAGGCAGTGAAGAGGGTGCTCCTGCAGCGTGAGGAT
GAGGTTTTGGACTTAAAGCAACAATTAGAAAAAGTTAAAGATGACTTAGTAAGTAAAAAT
GAAGAAGTCCTGCACCTGAACTTGAAGTTGGACCTGCAGCACAGCAGTATTGCCGCCAGC
ATCAGAGAGCTGCAGGAAGAGAATGCCAGTCTGAAGGCCGCGCACACCAGAAGTCCGGAA
ATCGAGGAGCTCAGGTCCGTCATTGAGACTCTGCGGCAGAACCAGGAGCGCTTGCAGAGG
GAAAGGGCCGAAGAGACCGAACAGTTGCACGAGGTCATCGAGAAGCTGCAGCGGGAGCTG
TCCCTCGCGGAGCCCGCGGGGCACGAGGTCAGCGACGGCGGCGCTGGGAACCTGCGGAGC
GAGCTGCTGGGTCTCGGGGCGGAGGGCGCCGAGGCCCGCGCGGCGCTGGAGGGCGAGCTG
CACGCCGCCCTCGAGGCCAAGGAGGCCCTGAGCCGGCAGCTGGGCGAGCAGGAGCGTGGG
CACGGCCGGGCCCTGGCGGCCCTGCAGCAGCGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGGGGCCCCCGTGACAGCGACCGGGCGCAGCTGGACGAGGAGGTTGAGTTGTTAGAA
GAAAAATTGAGAGAAAAATCAGACGGGCTTAATGAACTGATTGTAAAGAAAGAACTGGCA
GATAGACAAGTGTTGACCCAAGAAGAGGAGATTAAGCGTCTGGAGGAGGCAAACGCCAGC
AGCAGGCGAGAACTGGCGCAGCTCCAGGGAGAACTGGAGAGGCTGCGAAAGGCCCTGAGG
GACCTGGAACAGGATAAGGAGGCGTCGCAGGGGCAGCAGAGGAGTAACTTGCTCTTGGTG
TCTACACTGCAGTCTAAGCTCGACGAGGGCAAATGCCCGGTGCCTCCTGTGGGCGGCTCT
TCCGAGGGTCCCGAAGTCCAGCTGGAGGCAGTGAAGAGGGTGCTCCTGCAGCGTGAGGAT
GAGGTTTTGGACTTAAAGCAACAATTAGAAAAAGTTAAAGATGACTTAGTAAGTAAAAAT
GAAGAAGTCCTGCACCTGAACTTGAAGTTGGACCTGCAGCACAGCAGTATTGCCGCCAGC
ATCAGAGAGCTGCAGGAAGAGAATGCCAGTCTGAAGGCCGCGCACACCAGAAGTCCGGAA
ATCGAGGAGCTCAGGTCCGTCATTGAGACTCTGCGGCAGAACCAGGAGCGCTTGCAGAGG
GAAAGGGCCGAAGAGACCGAACAGTTGCACGAGGTCATCGAGAAGCTGCAGCGGGAGCTG
TCCCTCGCGGAGCCCGCGGGGCACGAGGTCAGCGACGGCGGCGCTGGGAACCTGCGGAGC
GAGCTGCTGGGTCTCGGGGCGGAGGGCGCCGAGGCCCGCGCGGCGCTGGAGGGCGAGCTG
CACGCCGCCCTCGAGGCCAAGGAGGCCCTGAGCCGGCAGCTGGGCGAGCAGGAGCGTGGG
CACGGCCGGGCCCTGGCGGCCCTGCAGCAGCGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               123-242, + strand, RNAz p=0.926966

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-242, + strand, RNAz p=0.926966

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               44-253, gnl|bosTau2|chr1 (65626345-65626136)
               

               
               44-253, gnl|canFam2|chr31 (42006304-42006547)
               

               
               44-253, gnl|dasNov1|scaffold_253084 (965-717)
               

               
               44-253, gnl|echTel1|scaffold_144472 (872-626)
               

               
               44-253, gnl|hg17|chr21 (46643898-46644146)
               

               
               44-253, gnl|Hg17|chr21 (46643930-46644139)
               

               
               44-253, gnl|loxAfr1|scaffold_53876 (10015-10267)
               

               
               44-253, gnl|mm7|chr10 (76057220-76056978)
               

               
               44-253, gnl|Mm7|chr10 (76057188-76056995)
               

               
               44-253, gnl|monDom2|scaffold_190 (938728-938504)
               

               
               44-253, gnl|oryCun1|scaffold_115803 (9363-9119)
               

               
               44-253, gnl|rheMac2|chr3 (384625-384377)
               

               
               44-253, gnl|rn3|chr20 (12655445-12655686)
               


               
               422-575, gnl|bosTau2|chr1 (65623816-65623663)
               

               
               422-575, gnl|Hg17|chr21 (46646671-46646824)
               


               
               589-935, gnl|bosTau2|chr1 (65618470-65618124)
               

               
               589-935, gnl|Hg17|chr21 (46655543-46655886)
               

               
               589-935, gnl|Mm7|chr10 (76048678-76048335)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-253, gnl|bosTau2|chr1 (65626345-65626136)
               

               
               44-253, gnl|canFam2|chr31 (42006304-42006547)
               

               
               44-253, gnl|dasNov1|scaffold_253084 (965-717)
               

               
               44-253, gnl|echTel1|scaffold_144472 (872-626)
               

               
               44-253, gnl|hg17|chr21 (46643898-46644146)
               

               
               44-253, gnl|Hg17|chr21 (46643930-46644139)
               

               
               44-253, gnl|loxAfr1|scaffold_53876 (10015-10267)
               

               
               44-253, gnl|mm7|chr10 (76057220-76056978)
               

               
               44-253, gnl|Mm7|chr10 (76057188-76056995)
               

               
               44-253, gnl|monDom2|scaffold_190 (938728-938504)
               

               
               44-253, gnl|oryCun1|scaffold_115803 (9363-9119)
               

               
               44-253, gnl|rheMac2|chr3 (384625-384377)
               

               
               44-253, gnl|rn3|chr20 (12655445-12655686)
               


               
               422-575, gnl|bosTau2|chr1 (65623816-65623663)
               

               
               422-575, gnl|Hg17|chr21 (46646671-46646824)
               


               
               589-935, gnl|bosTau2|chr1 (65618470-65618124)
               

               
               589-935, gnl|Hg17|chr21 (46655543-46655886)
               

               
               589-935, gnl|Mm7|chr10 (76048678-76048335)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	44-253, gnl\|bosTau2\|chr1 (65626345-65626136)
	44-253, gnl\|canFam2\|chr31 (42006304-42006547)
	44-253, gnl\|dasNov1\|scaffold_253084 (965-717)
	44-253, gnl\|echTel1\|scaffold_144472 (872-626)
	44-253, gnl\|hg17\|chr21 (46643898-46644146)
	44-253, gnl\|Hg17\|chr21 (46643930-46644139)
	44-253, gnl\|loxAfr1\|scaffold_53876 (10015-10267)
	44-253, gnl\|mm7\|chr10 (76057220-76056978)
	44-253, gnl\|Mm7\|chr10 (76057188-76056995)
	44-253, gnl\|monDom2\|scaffold_190 (938728-938504)
	44-253, gnl\|oryCun1\|scaffold_115803 (9363-9119)
	44-253, gnl\|rheMac2\|chr3 (384625-384377)
	44-253, gnl\|rn3\|chr20 (12655445-12655686)

	422-575, gnl\|bosTau2\|chr1 (65623816-65623663)
	422-575, gnl\|Hg17\|chr21 (46646671-46646824)

	589-935, gnl\|bosTau2\|chr1 (65618470-65618124)
	589-935, gnl\|Hg17\|chr21 (46655543-46655886)
	589-935, gnl\|Mm7\|chr10 (76048678-76048335)