Non-Coding RNA Search

Ss1.1-rplac_3471.5

Sequence:


               
               AGTCCTCTGGGTTTCTTTATAGTATCAGGATATTCATAAGCGTATATTAAAAGCAGACCT
ATTTTGATAGTGTTTGTTAAGAAAATGTAATTAGAACTCCCCCAAATTAGTATTTTTCCC
CTCACATCTGTACTGGGGAAAAAAGATACTGGCTTGGCCTACTTGTGAGCAGGGCAGCAA
GCGCCCTGCTTTGGGAGAGGCGGACAAGGCCCTGGGGCGCAAGTGATGAGCTTTCTGTAT
ATAAATGTTCCTGTCCACAGCGGAGTCCCTAGGGACCGGGAGGCCTTCTTTGGAAGAACC
TCATAGGATGTTGTGTAACACCCCACACTTGAGGGGAAGCCTTTCCAGGTAGCTTGAAAT
CTCTTTAAGTCAGTCCATGTGGAAAACACCTTTTGATGTAAACGAAGAGCCCTCTGTTGC
CCTCTCCCTCTAGAGCAAAGTGGTCTTTCCTGACCGTAGACCACACACTTTGAGGTCCGT
GACTATAAGCATTTGAGGCCTTGGGGCCGCAAGTGTATATTAATACTTTTTGTGTGTCCA
GCAGTCACGTGCAGGTGCCCACCGACCCCTGGATGAGGTGAACTACGCCCACAGAAAGTC
ATGGCCCCAAAGAACTGGTACAGTCCGTGTTTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCTCTGGGTTTCTTTATAGTATCAGGATATTCATAAGCGTATATTAAAAGCAGACCT
ATTTTGATAGTGTTTGTTAAGAAAATGTAATTAGAACTCCCCCAAATTAGTATTTTTCCC
CTCACATCTGTACTGGGGAAAAAAGATACTGGCTTGGCCTACTTGTGAGCAGGGCAGCAA
GCGCCCTGCTTTGGGAGAGGCGGACAAGGCCCTGGGGCGCAAGTGATGAGCTTTCTGTAT
ATAAATGTTCCTGTCCACAGCGGAGTCCCTAGGGACCGGGAGGCCTTCTTTGGAAGAACC
TCATAGGATGTTGTGTAACACCCCACACTTGAGGGGAAGCCTTTCCAGGTAGCTTGAAAT
CTCTTTAAGTCAGTCCATGTGGAAAACACCTTTTGATGTAAACGAAGAGCCCTCTGTTGC
CCTCTCCCTCTAGAGCAAAGTGGTCTTTCCTGACCGTAGACCACACACTTTGAGGTCCGT
GACTATAAGCATTTGAGGCCTTGGGGCCGCAAGTGTATATTAATACTTTTTGTGTGTCCA
GCAGTCACGTGCAGGTGCCCACCGACCCCTGGATGAGGTGAACTACGCCCACAGAAAGTC
ATGGCCCCAAAGAACTGGTACAGTCCGTGTTTCTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               78-192, - strand, RNAz p=0.818875
               

               
               105-203, - strand, RNAz p=0.77761

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-192, - strand, RNAz p=0.818875
               

               
               105-203, - strand, RNAz p=0.77761

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-632, gnl|bosTau2|chr21 (38623031-38622374)
               

               
               1-632, gnl|canFam2|chr8 (65466840-65467430)
               

               
               1-632, gnl|dasNov1|scaffold_30253 (72923-72329)
               

               
               1-632, gnl|echTel1|scaffold_320539 (127998-128476)
               

               
               1-632, gnl|hg17|chr14 (92763921-92764514)
               

               
               1-632, gnl|Hg17|chr14 (92763985-92764641)
               

               
               1-632, gnl|loxAfr1|scaffold_25050 (33770-34364)
               

               
               1-632, gnl|mm7|chr12 (100271776-100272292)
               

               
               1-632, gnl|Mm7|chr12 (100271835-100272414)
               

               
               1-632, gnl|monDom2|scaffold_8 (31623929-31624584)
               

               
               1-632, gnl|oryCun1|scaffold_189129 (68465-67933)
               

               
               1-632, gnl|panTro1|chr15 (93182879-93183472)
               

               
               1-632, gnl|rheMac2|chr7 (156433782-156434373)
               

               
               1-632, gnl|rn3|chr6 (127054041-127054574)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-632, gnl|bosTau2|chr21 (38623031-38622374)
               

               
               1-632, gnl|canFam2|chr8 (65466840-65467430)
               

               
               1-632, gnl|dasNov1|scaffold_30253 (72923-72329)
               

               
               1-632, gnl|echTel1|scaffold_320539 (127998-128476)
               

               
               1-632, gnl|hg17|chr14 (92763921-92764514)
               

               
               1-632, gnl|Hg17|chr14 (92763985-92764641)
               

               
               1-632, gnl|loxAfr1|scaffold_25050 (33770-34364)
               

               
               1-632, gnl|mm7|chr12 (100271776-100272292)
               

               
               1-632, gnl|Mm7|chr12 (100271835-100272414)
               

               
               1-632, gnl|monDom2|scaffold_8 (31623929-31624584)
               

               
               1-632, gnl|oryCun1|scaffold_189129 (68465-67933)
               

               
               1-632, gnl|panTro1|chr15 (93182879-93183472)
               

               
               1-632, gnl|rheMac2|chr7 (156433782-156434373)
               

               
               1-632, gnl|rn3|chr6 (127054041-127054574)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	78-192, - strand, RNAz p=0.818875
	105-203, - strand, RNAz p=0.77761

	1-632, gnl\|bosTau2\|chr21 (38623031-38622374)
	1-632, gnl\|canFam2\|chr8 (65466840-65467430)
	1-632, gnl\|dasNov1\|scaffold_30253 (72923-72329)
	1-632, gnl\|echTel1\|scaffold_320539 (127998-128476)
	1-632, gnl\|hg17\|chr14 (92763921-92764514)
	1-632, gnl\|Hg17\|chr14 (92763985-92764641)
	1-632, gnl\|loxAfr1\|scaffold_25050 (33770-34364)
	1-632, gnl\|mm7\|chr12 (100271776-100272292)
	1-632, gnl\|Mm7\|chr12 (100271835-100272414)
	1-632, gnl\|monDom2\|scaffold_8 (31623929-31624584)
	1-632, gnl\|oryCun1\|scaffold_189129 (68465-67933)
	1-632, gnl\|panTro1\|chr15 (93182879-93183472)
	1-632, gnl\|rheMac2\|chr7 (156433782-156434373)
	1-632, gnl\|rn3\|chr6 (127054041-127054574)