Non-Coding RNA Search

Ss1.1-rplac_3475.5

Sequence:


               
               TATCTTGTATCTTAGATGATGAAAAATGCAATAGAGGGAAAATAAGAA------------
------------------------------------------------------------
------------------------------------------------------------
AAAGAAAAAAGAAAAGGAAAAGAAAAGAAAATAGGGAGTATCAGTAGCTCTGACAAGGCG
AGCCCTTGCTGAGAAAGTGGCACTTGAGGGAGGCACAGTCCAGCTGTCTGTGTGAATGCC
TCATGTAACCCCTAGAGGGCACTAGGGGGCAGGTACTATTAAACTTCCGTTTTGTAGGCG
AGGAAGCCAGAGCAGAGAAGTTAAGTAACTGGCTAAAAGTTGCACAGCCACTAAGTGTGG
GAAGGCTTGTCTGCTGCTAAAGCCTGTGCTTCTGGAGTCAGTCGTGGAAGGCTTCCTGGA
GGAGCTAATTTTTTCCAGCCCTTTTATGGTTTCTCACATTGAACCTTTACAACAACCATC
CCCAAGGAAACCAGAGCTCAGAAGGAGATGTGCCCAGAGTCACAGTCCATAAAAGCCAGG
ATTCAAAGCTGGGTGTGTCAAGGGTGTCTTGGGTTTGGTGGAGTCCCTGTGGGAGGGCCA
GTGCCTGATGACCTTCTGGGGCCTCAGGTGGCCCCCACCATGAGCCTGCAGGTGATTGGG
CCCCCCAGCACAGGTTCCAAGGTGGTGCTGTGGGCTGAGAGCCGCCTGCCCCGCCAGATG
TGGAGCATCAGCGAATCGGGCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCTTGTATCTTAGATGATGAAAAATGCAATAGAGGGAAAATAAGAA------------
------------------------------------------------------------
------------------------------------------------------------
AAAGAAAAAAGAAAAGGAAAAGAAAAGAAAATAGGGAGTATCAGTAGCTCTGACAAGGCG
AGCCCTTGCTGAGAAAGTGGCACTTGAGGGAGGCACAGTCCAGCTGTCTGTGTGAATGCC
TCATGTAACCCCTAGAGGGCACTAGGGGGCAGGTACTATTAAACTTCCGTTTTGTAGGCG
AGGAAGCCAGAGCAGAGAAGTTAAGTAACTGGCTAAAAGTTGCACAGCCACTAAGTGTGG
GAAGGCTTGTCTGCTGCTAAAGCCTGTGCTTCTGGAGTCAGTCGTGGAAGGCTTCCTGGA
GGAGCTAATTTTTTCCAGCCCTTTTATGGTTTCTCACATTGAACCTTTACAACAACCATC
CCCAAGGAAACCAGAGCTCAGAAGGAGATGTGCCCAGAGTCACAGTCCATAAAAGCCAGG
ATTCAAAGCTGGGTGTGTCAAGGGTGTCTTGGGTTTGGTGGAGTCCCTGTGGGAGGGCCA
GTGCCTGATGACCTTCTGGGGCCTCAGGTGGCCCCCACCATGAGCCTGCAGGTGATTGGG
CCCCCCAGCACAGGTTCCAAGGTGGTGCTGTGGGCTGAGAGCCGCCTGCCCCGCCAGATG
TGGAGCATCAGCGAATCGGGCCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               356-473, - strand, RNAz p=0.907633

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-473, - strand, RNAz p=0.907633

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               160-672, gnl|bosTau2|chr2 (78178319-78177798)
               

               
               160-672, gnl|Hg17|chr1 (26333384-26332840)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-672, gnl|bosTau2|chr2 (78178319-78177798)
               

               
               160-672, gnl|Hg17|chr1 (26333384-26332840)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               nca (0.136874)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               nca (0.136874)
               

               
               pla (0.133672)

	160-672, gnl\|bosTau2\|chr2 (78178319-78177798)
	160-672, gnl\|Hg17\|chr1 (26333384-26332840)