Non-Coding RNA Search

Ss1.1-rplac_3486.5

Sequence:


               
               GGAAGGAGGCGTCTCGGCCCGGGCGGCGGCGGCCCCGCGCGAGAGAGGCTGAGCTTGGCG
GCCACGGACTGTTACATCGTGCACGAGATCTACAGCGGGGAGAACGCGCAGGACCAGTTT
GAGTGCGAGCTGGAGCAGGCCCTGGAGGCCCAGTACAAGTACATCGTGATCGAGCCCACG
CGCATCGGCGACGAGACGGCCCGCTGGATCACCGTGGGCAACTGCCTGCACAAGACCACC
GTGCTGGCGGGCACCGCCTGCCTCTTCACGCCGCTGGCGCTGCCCCTGGATTACTCGCAC
TACGTCTCCCTGCCCGCGGGCGTGCTGAGCCTGGCCTGCTGCACCCTCTACGGCATCTCC
TGGCAGTTCGACCCCTGCTGCAAGTACCAGGTGGAGTACGACGCCTACAAACTGTCGCGC
CTGCCCCTGCACACGCTCACCTCCTCCACGCCGGTGGTGCTGGTCCGCAAGGACGACCTG
CACAGGAAGAGACTGCACAACACGATAGCGCTGGCGGCCCTGGTGTACTGTGTCAAGAAG
GTGTACGAGCTCTGCGCCGTGTGAGCCGGGAGGCGGCCGGCCTCACGCTTGTCCGCTGAA
CGGAAGGACACATCACCGGGGCCCCGGGGCGCTCGGCTCAGCCCACGAAGACGTGGGTCC
CGCGACCCCGGGGTCGGCGGTGCGGGTTTCCGACGGGGCGGCAGGATGTGGTGGGAGCAG
CGCTGCGGGGGGGCGACCGCGCTCGGGGGTCCTTGAGAACATCCGGTAACTGTACCACCC
AGAGCCAGCCGGAGCTGTTGACCATTAAAGTGATGAGAATTTCCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAGGCGTCTCGGCCCGGGCGGCGGCGGCCCCGCGCGAGAGAGGCTGAGCTTGGCG
GCCACGGACTGTTACATCGTGCACGAGATCTACAGCGGGGAGAACGCGCAGGACCAGTTT
GAGTGCGAGCTGGAGCAGGCCCTGGAGGCCCAGTACAAGTACATCGTGATCGAGCCCACG
CGCATCGGCGACGAGACGGCCCGCTGGATCACCGTGGGCAACTGCCTGCACAAGACCACC
GTGCTGGCGGGCACCGCCTGCCTCTTCACGCCGCTGGCGCTGCCCCTGGATTACTCGCAC
TACGTCTCCCTGCCCGCGGGCGTGCTGAGCCTGGCCTGCTGCACCCTCTACGGCATCTCC
TGGCAGTTCGACCCCTGCTGCAAGTACCAGGTGGAGTACGACGCCTACAAACTGTCGCGC
CTGCCCCTGCACACGCTCACCTCCTCCACGCCGGTGGTGCTGGTCCGCAAGGACGACCTG
CACAGGAAGAGACTGCACAACACGATAGCGCTGGCGGCCCTGGTGTACTGTGTCAAGAAG
GTGTACGAGCTCTGCGCCGTGTGAGCCGGGAGGCGGCCGGCCTCACGCTTGTCCGCTGAA
CGGAAGGACACATCACCGGGGCCCCGGGGCGCTCGGCTCAGCCCACGAAGACGTGGGTCC
CGCGACCCCGGGGTCGGCGGTGCGGGTTTCCGACGGGGCGGCAGGATGTGGTGGGAGCAG
CGCTGCGGGGGGGCGACCGCGCTCGGGGGTCCTTGAGAACATCCGGTAACTGTACCACCC
AGAGCCAGCCGGAGCTGTTGACCATTAAAGTGATGAGAATTTCCCCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56800058|emb|CAI35260.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56800058|emb|CAI35260.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-575, gnl|bosTau2|chr19 (27635658-27635130)
               

               
               46-575, gnl|Hg17|chr17 (21042747-21042156)
               

               
               46-575, gnl|Mm7|chr11 (60946908-60946362)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-575, gnl|bosTau2|chr19 (27635658-27635130)
               

               
               46-575, gnl|Hg17|chr17 (21042747-21042156)
               

               
               46-575, gnl|Mm7|chr11 (60946908-60946362)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               mas (0.42061)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	46-575, gnl\|bosTau2\|chr19 (27635658-27635130)
	46-575, gnl\|Hg17\|chr17 (21042747-21042156)
	46-575, gnl\|Mm7\|chr11 (60946908-60946362)

	mas (0.42061)
	pla (0.267344)
	nmm (0.265604)
	jej (0.197844)
	nep (0.183925)
	nje (0.16592)
	csp (0.161186)
	cag (0.151194)
	lnt (0.142308)
	cov (0.132153)
	ecc (0.115035)