Ss1.1-rplac_3490.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGGACGTTGCTATGGACACCACAGTCACTGAAACCATGTCCTCTGGAGATTCTGGCAA GAAGTGCCAAGGATGACTTGTCATCTGTACTCAAGCCAAGAATGGTGGTCTGCACTTGCC AGGCAGAGAGCCAGTGTTTATATAACCAGAACGATCGGGTGGGCAATTCCTCCCTGGAGA TGGCCGGCTGCAAGTGTGACGGGAACACCTTTGGCCGCTACTGCAACCACTCCAAGGACC CCTGTGATGAGCCGTGCTTCCCGAATGTGAAGTGCATTTCCGGGAAGGGCTGCGAGGCCT GCCCGACAACACTGACTGGGGATGGACGTCACTGTGCACCTCTCAACAGCTTTTTCAACT GTTGGAACAAGACCTGTCCTGAGAATTACTGCTACAACCAGGGTCGCTGCTACATCTCCC AGTCTCTGACCTGCGAGCCCGCCTGCACCTGCCCCCCAGCCTTCATGGAAGACACCCGCT GCTTCCTGGCTGGAAAAAATTTCACTCCAACCATCCTTCCAGAGCTTCCCCCAAGGCTCA TCCAGCTCTTGCTCAGTGAAAAAGAAAATGCCTCCCAAGCAGATGTCAATGCCACGGTGG CTTATAGACTGGGGAACCTGGATGTGCGGGCCTTTCTCCGGAACAGACAAGTGGAACGAG TTGAACTCCCAGCAATACCGGCCTCAGGAAACTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGGACGTTGCTATGGACACCACAGTCACTGAAACCATGTCCTCTGGAGATTCTGGCAA GAAGTGCCAAGGATGACTTGTCATCTGTACTCAAGCCAAGAATGGTGGTCTGCACTTGCC AGGCAGAGAGCCAGTGTTTATATAACCAGAACGATCGGGTGGGCAATTCCTCCCTGGAGA TGGCCGGCTGCAAGTGTGACGGGAACACCTTTGGCCGCTACTGCAACCACTCCAAGGACC CCTGTGATGAGCCGTGCTTCCCGAATGTGAAGTGCATTTCCGGGAAGGGCTGCGAGGCCT GCCCGACAACACTGACTGGGGATGGACGTCACTGTGCACCTCTCAACAGCTTTTTCAACT GTTGGAACAAGACCTGTCCTGAGAATTACTGCTACAACCAGGGTCGCTGCTACATCTCCC AGTCTCTGACCTGCGAGCCCGCCTGCACCTGCCCCCCAGCCTTCATGGAAGACACCCGCT GCTTCCTGGCTGGAAAAAATTTCACTCCAACCATCCTTCCAGAGCTTCCCCCAAGGCTCA TCCAGCTCTTGCTCAGTGAAAAAGAAAATGCCTCCCAAGCAGATGTCAATGCCACGGTGG CTTATAGACTGGGGAACCTGGATGTGCGGGCCTTTCTCCGGAACAGACAAGTGGAACGAG TTGAACTCCCAGCAATACCGGCCTCAGGAAACTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 25-141, + strand, RNAz p=0.847412 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 25-141, + strand, RNAz p=0.847412 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chr1 (42409516-42409697) | |
| 1-182, gnl|canFam2|chr33 (32110543-32110788) | |
| 1-182, gnl|dasNov1|scaffold_1991 (708-463) | |
| 1-182, gnl|echTel1|scaffold_281764 (42531-42289) | |
| 1-182, gnl|hg17|chr3 (196973576-196973818) | |
| 1-182, gnl|Hg17|chr3 (196973780-196973599) | |
| 1-182, gnl|mm7|chr16 (32449468-32449228) | |
| 1-182, gnl|Mm7|chr16 (32449262-32449443) | |
| 1-182, gnl|monDom2|scaffold_24 (25371288-25371533) | |
| 1-182, gnl|oryCun1|scaffold_118232 (4961-5206) | |
| 1-182, gnl|panTro1|chr2 (201164609-201164851) | |
| 1-182, gnl|rheMac2|chr2 (189674527-189674285) | |
| 1-182, gnl|rn3|chr11 (69894098-69894338) | |
| 183-338, gnl|bosTau2|chr1 (42411221-42411376) | |
| 183-338, gnl|canFam2|chr33 (32108927-32109110) | |
| 183-338, gnl|echTel1|scaffold_281764 (45090-44909) | |
| 183-338, gnl|galGal2|chr9 (14345929-14345744) | |
| 183-338, gnl|hg17|chr3 (196970655-196970840) | |
| 183-338, gnl|Hg17|chr3 (196970824-196970669) | |
| 183-338, gnl|loxAfr1|scaffold_23113 (34559-34740) | |
| 183-338, gnl|mm7|chr16 (32450453-32450275) | |
| 183-338, gnl|Mm7|chr16 (32450282-32450437) | |
| 183-338, gnl|monDom2|scaffold_24 (25371037-25371225) | |
| 183-338, gnl|oryCun1|scaffold_118232 (3848-4016) | |
| 183-338, gnl|panTro1|chr2 (201161672-201161857) | |
| 183-338, gnl|rheMac2|chr2 (189677518-189677333) | |
| 183-338, gnl|rn3|chr11 (69892990-69893168) | |
| 354-522, gnl|bosTau2|chr1 (42412326-42412491) | |
| 354-522, gnl|Hg17|chr3 (196969671-196969506) | |
| 354-522, gnl|Mm7|chr16 (32451321-32451484) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chr1 (42409516-42409697) | |
| 1-182, gnl|canFam2|chr33 (32110543-32110788) | |
| 1-182, gnl|dasNov1|scaffold_1991 (708-463) | |
| 1-182, gnl|echTel1|scaffold_281764 (42531-42289) | |
| 1-182, gnl|hg17|chr3 (196973576-196973818) | |
| 1-182, gnl|Hg17|chr3 (196973780-196973599) | |
| 1-182, gnl|mm7|chr16 (32449468-32449228) | |
| 1-182, gnl|Mm7|chr16 (32449262-32449443) | |
| 1-182, gnl|monDom2|scaffold_24 (25371288-25371533) | |
| 1-182, gnl|oryCun1|scaffold_118232 (4961-5206) | |
| 1-182, gnl|panTro1|chr2 (201164609-201164851) | |
| 1-182, gnl|rheMac2|chr2 (189674527-189674285) | |
| 1-182, gnl|rn3|chr11 (69894098-69894338) | |
| 183-338, gnl|bosTau2|chr1 (42411221-42411376) | |
| 183-338, gnl|canFam2|chr33 (32108927-32109110) | |
| 183-338, gnl|echTel1|scaffold_281764 (45090-44909) | |
| 183-338, gnl|galGal2|chr9 (14345929-14345744) | |
| 183-338, gnl|hg17|chr3 (196970655-196970840) | |
| 183-338, gnl|Hg17|chr3 (196970824-196970669) | |
| 183-338, gnl|loxAfr1|scaffold_23113 (34559-34740) | |
| 183-338, gnl|mm7|chr16 (32450453-32450275) | |
| 183-338, gnl|Mm7|chr16 (32450282-32450437) | |
| 183-338, gnl|monDom2|scaffold_24 (25371037-25371225) | |
| 183-338, gnl|oryCun1|scaffold_118232 (3848-4016) | |
| 183-338, gnl|panTro1|chr2 (201161672-201161857) | |
| 183-338, gnl|rheMac2|chr2 (189677518-189677333) | |
| 183-338, gnl|rn3|chr11 (69892990-69893168) | |
| 354-522, gnl|bosTau2|chr1 (42412326-42412491) | |
| 354-522, gnl|Hg17|chr3 (196969671-196969506) | |
| 354-522, gnl|Mm7|chr16 (32451321-32451484) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| clu (0.119646) |