Non-Coding RNA Search

Ss1.1-rplac_3494.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTCTAGAAGCACAGCATTTATTTCGTTTCTGAACAATTAA
AACTCCTCATGAGCAGGTCTGTGCCCAGCCTGCGCGTCCCGCTCAGCTGCTCTGTCCACC
ACGCTGACCCAGGGGCTGCCCTGGATGTAAAAGCGCAGGGGCTTCTGGGCCCACTCTCCT
GCGTGGCCTATGCCCACGCGGGCTGCTGCCACCACAGCTGGCTCACCAGACCCTGAGGGA
CCCCGCTCCAGCCACACAGCCTCATCCGTGGCCAGGTCCCGCTGGTCGAAGCTCTTGTCG
ATGGCCAGGGCCTGGCACAGCTTGGAGGGGCCGCTGCAGAGCTCCCGGTCTTTGAGGGCT
CGGCTGGCAGCACCTTTGCGAACAGTGTGGCGTAGCTGCCGCATGGCCTCCAGGCCCCCC
AGGGGCTCCAGCGCTCGCAGTAAGACACACGCCCCGTCGCCCCGGCTGGAGACGTTCATG
CAGAAGTACATGCCGTAGATGAGGTACACATACAGGGTGCCCGGCCTCATGAACATGCCG
CGGTTGCGAGGTGTCTGCCGGCCCCCCCTCGAGTGGGCAGCCTGGTCCTCCGGCCCCAGG
TACGCCTCCGTCTCCACGATGCGCCCACGGAGCTCGGTGCCGTCCCCCAGGTGTCGCACC
AAGACCTGTCCCAGAAATGCCCGGGCCAGGGGGACTGCGGGCTGGTCAAAAAACTCGGAT
CCCAGGCGAGCAGGGTGGCCCTTTAGGCTTGAGAAATAGATGCTGCGCTGGGGGCCTGGG
GTCATGGGCGGCGCCATTCGGGGCTCCTTGGAGGAAGATATTTGGGCCCCATCGGGTGGG
GCCTGATGCCGCTTTGCCGTCAACAGTCGCTGCTTTTTCTGCCCCATCCTTCGGGAAAGC
TGGCCCAGCGGCGCGCGGGAACCCGGAGGCCCCATCGCGGCTCTCGGCGCGCAGCCCACC
CTGGAGCGGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTCTAGAAGCACAGCATTTATTTCGTTTCTGAACAATTAA
AACTCCTCATGAGCAGGTCTGTGCCCAGCCTGCGCGTCCCGCTCAGCTGCTCTGTCCACC
ACGCTGACCCAGGGGCTGCCCTGGATGTAAAAGCGCAGGGGCTTCTGGGCCCACTCTCCT
GCGTGGCCTATGCCCACGCGGGCTGCTGCCACCACAGCTGGCTCACCAGACCCTGAGGGA
CCCCGCTCCAGCCACACAGCCTCATCCGTGGCCAGGTCCCGCTGGTCGAAGCTCTTGTCG
ATGGCCAGGGCCTGGCACAGCTTGGAGGGGCCGCTGCAGAGCTCCCGGTCTTTGAGGGCT
CGGCTGGCAGCACCTTTGCGAACAGTGTGGCGTAGCTGCCGCATGGCCTCCAGGCCCCCC
AGGGGCTCCAGCGCTCGCAGTAAGACACACGCCCCGTCGCCCCGGCTGGAGACGTTCATG
CAGAAGTACATGCCGTAGATGAGGTACACATACAGGGTGCCCGGCCTCATGAACATGCCG
CGGTTGCGAGGTGTCTGCCGGCCCCCCCTCGAGTGGGCAGCCTGGTCCTCCGGCCCCAGG
TACGCCTCCGTCTCCACGATGCGCCCACGGAGCTCGGTGCCGTCCCCCAGGTGTCGCACC
AAGACCTGTCCCAGAAATGCCCGGGCCAGGGGGACTGCGGGCTGGTCAAAAAACTCGGAT
CCCAGGCGAGCAGGGTGGCCCTTTAGGCTTGAGAAATAGATGCTGCGCTGGGGGCCTGGG
GTCATGGGCGGCGCCATTCGGGGCTCCTTGGAGGAAGATATTTGGGCCCCATCGGGTGGG
GCCTGATGCCGCTTTGCCGTCAACAGTCGCTGCTTTTTCTGCCCCATCCTTCGGGAAAGC
TGGCCCAGCGGCGCGCGGGAACCCGGAGGCCCCATCGCGGCTCTCGGCGCGCAGCCCACC
CTGGAGCGGACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1061128|emb|CAA39875.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1061128|emb|CAA39875.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-333, + strand, RNAz p=0.579874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-333, + strand, RNAz p=0.579874

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               21-461, gnl|bosTau2|chr25 (2566493-2566050)
               

               
               21-461, gnl|Hg17|chr16 (75843-75399)
               

               
               21-461, gnl|Mm7|chr11 (32184027-32183583)
               


               
               664-902, gnl|bosTau2|chr25 (2561527-2561289)
               

               
               664-902, gnl|Hg17|chr16 (69701-69421)
               

               
               664-902, gnl|Mm7|chr11 (32179961-32179759)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-461, gnl|bosTau2|chr25 (2566493-2566050)
               

               
               21-461, gnl|Hg17|chr16 (75843-75399)
               

               
               21-461, gnl|Mm7|chr11 (32184027-32183583)
               


               
               664-902, gnl|bosTau2|chr25 (2561527-2561289)
               

               
               664-902, gnl|Hg17|chr16 (69701-69421)
               

               
               664-902, gnl|Mm7|chr11 (32179961-32179759)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pty (0.428143)
               

               
               ill (0.351185)
               

               
               ecc (0.23007)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.428143)
               

               
               ill (0.351185)
               

               
               ecc (0.23007)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	21-461, gnl\|bosTau2\|chr25 (2566493-2566050)
	21-461, gnl\|Hg17\|chr16 (75843-75399)
	21-461, gnl\|Mm7\|chr11 (32184027-32183583)

	664-902, gnl\|bosTau2\|chr25 (2561527-2561289)
	664-902, gnl\|Hg17\|chr16 (69701-69421)
	664-902, gnl\|Mm7\|chr11 (32179961-32179759)

	pty (0.428143)
	ill (0.351185)
	ecc (0.23007)
	nlu (0.191681)
	nep (0.183925)
	nje (0.16592)
	cag (0.151194)
	lnt (0.142308)
	pla (0.133672)
	cov (0.132153)
	cly (0.120642)
	jej (0.0989218)