Ss1.1-rplac_3520.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGGCTCGGTCTTTCTGACAAGAGGTGTGAGAGGATTGCTGTTTTATTGCAATCATGG TGCAAAAGTACCAGTCACCGGTGAGGGTGTATAAACACCCCTTTGAACTAATTATGGCTG CCTATGAGAGGAGGTTCCCCACGTGTCCCTTGATCCCCATGTTTGTGGACAGCGACACTG TGAATGAATTCAGGAGCGAAGACGGGGCCATTCACGTCATAGAAAGGCGCTGCAAGCTGG ATATAGATGCGCCCAGACTCCTGAAGAAGATCGCAGGAGTTGATTATGTTTATTTTGTCC AGAAAAACTCACTGAATTCTCGGGAACGCACTTTGCACATTGAGGCCCATAATGAGACGT TTTCCAACCGGGTCATCATCAACGAGCACTGCTGCTACAGCGTCCACCCCGAAAATGAAG ACTGGACCTGTTTTGAACAGTCTGCAAGTTTAGATATTAAATCTTTCTTTGGTTTTGAAA GTACAGTGGAAAAAATTGCAATGAAACAATATACCAGCAACATTAAAAAAGGGAAGGAGA TCATCGAGTACTACCTGCGGCAGCTGGAGGAGGAGGGCATCACCTTCGTGCCACGCTGGA CTCCGCCGGCCCTGGCGCCCTCCTCGGATGCCGCCGCCTCGTCCTGCAAGAAGCAGGCGG CCTCGTCGGCTGGTGTGGACGCAGAGCCCGCGCTCAAGGACGGGCTGAGCGGCGAGCCCC TCAGCAACCCCAGCGGGGCCCCCGAGCCCGTGGCGGGGCCCCCCGACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGGCTCGGTCTTTCTGACAAGAGGTGTGAGAGGATTGCTGTTTTATTGCAATCATGG TGCAAAAGTACCAGTCACCGGTGAGGGTGTATAAACACCCCTTTGAACTAATTATGGCTG CCTATGAGAGGAGGTTCCCCACGTGTCCCTTGATCCCCATGTTTGTGGACAGCGACACTG TGAATGAATTCAGGAGCGAAGACGGGGCCATTCACGTCATAGAAAGGCGCTGCAAGCTGG ATATAGATGCGCCCAGACTCCTGAAGAAGATCGCAGGAGTTGATTATGTTTATTTTGTCC AGAAAAACTCACTGAATTCTCGGGAACGCACTTTGCACATTGAGGCCCATAATGAGACGT TTTCCAACCGGGTCATCATCAACGAGCACTGCTGCTACAGCGTCCACCCCGAAAATGAAG ACTGGACCTGTTTTGAACAGTCTGCAAGTTTAGATATTAAATCTTTCTTTGGTTTTGAAA GTACAGTGGAAAAAATTGCAATGAAACAATATACCAGCAACATTAAAAAAGGGAAGGAGA TCATCGAGTACTACCTGCGGCAGCTGGAGGAGGAGGGCATCACCTTCGTGCCACGCTGGA CTCCGCCGGCCCTGGCGCCCTCCTCGGATGCCGCCGCCTCGTCCTGCAAGAAGCAGGCGG CCTCGTCGGCTGGTGTGGACGCAGAGCCCGCGCTCAAGGACGGGCTGAGCGGCGAGCCCC TCAGCAACCCCAGCGGGGCCCCCGAGCCCGTGGCGGGGCCCCCCGACG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 120-278, gnl|bosTau2|chr19 (48680423-48680265) | |
| 120-278, gnl|canFam2|chr9 (6701948-6701794) | |
| 120-278, gnl|danRer3|chr3 (44971659-44971505) | |
| 120-278, gnl|dasNov1|scaffold_224115 (756-601) | |
| 120-278, gnl|fr1|chrUn (153577272-153577109) | |
| 120-278, gnl|galGal2|chr18 (3927223-3927057) | |
| 120-278, gnl|hg17|chr17 (72698479-72698645) | |
| 120-278, gnl|Hg17|chr17 (72698480-72698641) | |
| 120-278, gnl|loxAfr1|scaffold_6680 (11307-11146) | |
| 120-278, gnl|mm7|chr11 (117250462-117250617) | |
| 120-278, gnl|Mm7|chr11 (117250463-117250620) | |
| 120-278, gnl|monDom2|scaffold_18 (4796569-4796723) | |
| 120-278, gnl|panTro1|chr19 (76082733-76082897) | |
| 120-278, gnl|rheMac2|chr16 (72526736-72526900) | |
| 120-278, gnl|rn3|chr10 (107264484-107264639) | |
| 120-278, gnl|tetNig1|chrUn_random (39665797-39665643) | |
| 120-278, gnl|xenTro1|scaffold_135 (1516864-1516709) | |
| 395-534, gnl|bosTau2|chr19 (48678790-48678652) | |
| 395-534, gnl|canFam2|chr9 (6699804-6699616) | |
| 395-534, gnl|canFam2|chr9 (6699779-6699654) | |
| 395-534, gnl|danRer3|chr3 (44970228-44970061) | |
| 395-534, gnl|danRer3|chr3 (44970199-44970073) | |
| 395-534, gnl|dasNov1|scaffold_50468 (38040-38228) | |
| 395-534, gnl|dasNov1|scaffold_50468 (38065-38191) | |
| 395-534, gnl|echTel1|scaffold_278324 (395-576) | |
| 395-534, gnl|echTel1|scaffold_278324 (416-542) | |
| 395-534, gnl|fr1|chrUn (153576822-153576666) | |
| 395-534, gnl|fr1|chrUn (153576806-153576680) | |
| 395-534, gnl|galGal2|chr18 (3925409-3925230) | |
| 395-534, gnl|galGal2|chr18 (3925378-3925259) | |
| 395-534, gnl|hg17|chr11 (43875904-43876030) | |
| 395-534, gnl|hg17|chr17 (72701075-72701262) | |
| 395-534, gnl|Hg17|chr17 (72701092-72701230) | |
| 395-534, gnl|loxAfr1|scaffold_6680 (9682-9494) | |
| 395-534, gnl|loxAfr1|scaffold_6680 (9657-9531) | |
| 395-534, gnl|mm7|chr11 (117252309-117252497) | |
| 395-534, gnl|mm7|chr11 (117252333-117252459) | |
| 395-534, gnl|Mm7|chr11 (117252326-117252464) | |
| 395-534, gnl|monDom2|scaffold_18 (4801259-4801448) | |
| 395-534, gnl|monDom2|scaffold_18 (4801284-4801410) | |
| 395-534, gnl|panTro1|chr19 (76085282-76085469) | |
| 395-534, gnl|panTro1|chr9 (44371400-44371526) | |
| 395-534, gnl|rheMac2|chr14 (28213509-28213384) | |
| 395-534, gnl|rheMac2|chr16 (72529656-72529843) | |
| 395-534, gnl|rn3|chr10 (107265930-107266117) | |
| 395-534, gnl|rn3|chr10 (107265954-107266079) | |
| 395-534, gnl|tetNig1|chrUn_random (39665304-39665158) | |
| 395-534, gnl|tetNig1|chrUn_random (7915397-7915271) | |
| 395-534, gnl|xenTro1|scaffold_135 (1515115-1514937) | |
| 395-534, gnl|xenTro1|scaffold_135 (1515088-1514962) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-278, gnl|bosTau2|chr19 (48680423-48680265) | |
| 120-278, gnl|canFam2|chr9 (6701948-6701794) | |
| 120-278, gnl|danRer3|chr3 (44971659-44971505) | |
| 120-278, gnl|dasNov1|scaffold_224115 (756-601) | |
| 120-278, gnl|fr1|chrUn (153577272-153577109) | |
| 120-278, gnl|galGal2|chr18 (3927223-3927057) | |
| 120-278, gnl|hg17|chr17 (72698479-72698645) | |
| 120-278, gnl|Hg17|chr17 (72698480-72698641) | |
| 120-278, gnl|loxAfr1|scaffold_6680 (11307-11146) | |
| 120-278, gnl|mm7|chr11 (117250462-117250617) | |
| 120-278, gnl|Mm7|chr11 (117250463-117250620) | |
| 120-278, gnl|monDom2|scaffold_18 (4796569-4796723) | |
| 120-278, gnl|panTro1|chr19 (76082733-76082897) | |
| 120-278, gnl|rheMac2|chr16 (72526736-72526900) | |
| 120-278, gnl|rn3|chr10 (107264484-107264639) | |
| 120-278, gnl|tetNig1|chrUn_random (39665797-39665643) | |
| 120-278, gnl|xenTro1|scaffold_135 (1516864-1516709) | |
| 395-534, gnl|bosTau2|chr19 (48678790-48678652) | |
| 395-534, gnl|canFam2|chr9 (6699804-6699616) | |
| 395-534, gnl|canFam2|chr9 (6699779-6699654) | |
| 395-534, gnl|danRer3|chr3 (44970228-44970061) | |
| 395-534, gnl|danRer3|chr3 (44970199-44970073) | |
| 395-534, gnl|dasNov1|scaffold_50468 (38040-38228) | |
| 395-534, gnl|dasNov1|scaffold_50468 (38065-38191) | |
| 395-534, gnl|echTel1|scaffold_278324 (395-576) | |
| 395-534, gnl|echTel1|scaffold_278324 (416-542) | |
| 395-534, gnl|fr1|chrUn (153576822-153576666) | |
| 395-534, gnl|fr1|chrUn (153576806-153576680) | |
| 395-534, gnl|galGal2|chr18 (3925409-3925230) | |
| 395-534, gnl|galGal2|chr18 (3925378-3925259) | |
| 395-534, gnl|hg17|chr11 (43875904-43876030) | |
| 395-534, gnl|hg17|chr17 (72701075-72701262) | |
| 395-534, gnl|Hg17|chr17 (72701092-72701230) | |
| 395-534, gnl|loxAfr1|scaffold_6680 (9682-9494) | |
| 395-534, gnl|loxAfr1|scaffold_6680 (9657-9531) | |
| 395-534, gnl|mm7|chr11 (117252309-117252497) | |
| 395-534, gnl|mm7|chr11 (117252333-117252459) | |
| 395-534, gnl|Mm7|chr11 (117252326-117252464) | |
| 395-534, gnl|monDom2|scaffold_18 (4801259-4801448) | |
| 395-534, gnl|monDom2|scaffold_18 (4801284-4801410) | |
| 395-534, gnl|panTro1|chr19 (76085282-76085469) | |
| 395-534, gnl|panTro1|chr9 (44371400-44371526) | |
| 395-534, gnl|rheMac2|chr14 (28213509-28213384) | |
| 395-534, gnl|rheMac2|chr16 (72529656-72529843) | |
| 395-534, gnl|rn3|chr10 (107265930-107266117) | |
| 395-534, gnl|rn3|chr10 (107265954-107266079) | |
| 395-534, gnl|tetNig1|chrUn_random (39665304-39665158) | |
| 395-534, gnl|tetNig1|chrUn_random (7915397-7915271) | |
| 395-534, gnl|xenTro1|scaffold_135 (1515115-1514937) | |
| 395-534, gnl|xenTro1|scaffold_135 (1515088-1514962) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| ecc (0.115035) |