Ss1.1-rplac_3730.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATTTCTCTCGCTGTGGTCCTCTCCATCATCACACTGGCCACTGTCCTTTCCAATGCCT TTGTACTCACTACCATCTTCCTGACCAGGAAGCTCCACACTCCAGCCAACTATCTCATTG GCTCCCTGGCCATGACAGACCTCTTAGTTTCCATCTTGGTCATGCCCATCAGCATCCCAT ATACCATCACCCAAACCTGGAGCTTTGGCCAACTCCTGTGTGACATCTGGCTGTCTTCTG ACATCACATGCTGCACGGCCTCCATCCTGCATCTCTGTGTCATTGCTCTGGACAGGTACT GGGCCATCACGGATGCCCTGGAGTATAGTAAACGCCGGACAGCGGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATTTCTCTCGCTGTGGTCCTCTCCATCATCACACTGGCCACTGTCCTTTCCAATGCCT TTGTACTCACTACCATCTTCCTGACCAGGAAGCTCCACACTCCAGCCAACTATCTCATTG GCTCCCTGGCCATGACAGACCTCTTAGTTTCCATCTTGGTCATGCCCATCAGCATCCCAT ATACCATCACCCAAACCTGGAGCTTTGGCCAACTCCTGTGTGACATCTGGCTGTCTTCTG ACATCACATGCTGCACGGCCTCCATCCTGCATCTCTGTGTCATTGCTCTGGACAGGTACT GGGCCATCACGGATGCCCTGGAGTATAGTAAACGCCGGACAGCGGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-201, + strand, RNAz p=0.966358 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-201, + strand, RNAz p=0.966358 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 3-348, gnl|bosTau2|chr2 (82961545-82961890) | |
| 3-348, gnl|canFam2|chr2 (79092332-79091405) | |
| 3-348, gnl|canFam2|chr2 (79091853-79091419) | |
| 3-348, gnl|danRer3|chr17 (41797622-41796656) | |
| 3-348, gnl|danRer3|chr17 (40774245-40773818) | |
| 3-348, gnl|dasNov1|scaffold_229904 (3400-4331) | |
| 3-348, gnl|dasNov1|scaffold_229904 (3879-4267) | |
| 3-348, gnl|echTel1|scaffold_282375 (9616-8697) | |
| 3-348, gnl|echTel1|scaffold_282375 (9138-8711) | |
| 3-348, gnl|fr1|chrUn (67202946-67203848) | |
| 3-348, gnl|fr1|chrUn (226748316-226747889) | |
| 3-348, gnl|galGal2|chr23 (1581738-1580808) | |
| 3-348, gnl|galGal2|chr23 (1581249-1580822) | |
| 3-348, gnl|hg17|chr1 (23264886-23265813) | |
| 3-348, gnl|Hg17|chr1 (23265904-23265559) | |
| 3-348, gnl|hg17|chr12 (1131969-1132272) | |
| 3-348, gnl|loxAfr1|scaffold_5874 (55546-56473) | |
| 3-348, gnl|loxAfr1|scaffold_5874 (56032-56459) | |
| 3-348, gnl|mm7|chr4 (135822024-135821097) | |
| 3-348, gnl|mm7|chr4 (135821545-135821111) | |
| 3-348, gnl|Mm7|chr4 (135821004-135821349) | |
| 3-348, gnl|monDom2|scaffold_90 (5275359-5276286) | |
| 3-348, gnl|monDom2|scaffold_90 (5275845-5276272) | |
| 3-348, gnl|oryCun1|scaffold_211505 (46514-47441) | |
| 3-348, gnl|oryCun1|scaffold_211505 (46993-47427) | |
| 3-348, gnl|panTro1|chr1 (23633484-23634411) | |
| 3-348, gnl|panTro1|chr10 (1204052-1204355) | |
| 3-348, gnl|rheMac2|chr1 (25783438-25784365) | |
| 3-348, gnl|rheMac2|chr11 (1152145-1152475) | |
| 3-348, gnl|rn3|chr5 (155199833-155198906) | |
| 3-348, gnl|rn3|chr5 (155199354-155198920) | |
| 3-348, gnl|tetNig1|chr14 (9342349-9341437) | |
| 3-348, gnl|tetNig1|chr14 (9341875-9341451) | |
| 3-348, gnl|xenTro1|scaffold_718 (325820-326747) | |
| 3-348, gnl|xenTro1|scaffold_718 (326299-326733) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-348, gnl|bosTau2|chr2 (82961545-82961890) | |
| 3-348, gnl|canFam2|chr2 (79092332-79091405) | |
| 3-348, gnl|canFam2|chr2 (79091853-79091419) | |
| 3-348, gnl|danRer3|chr17 (41797622-41796656) | |
| 3-348, gnl|danRer3|chr17 (40774245-40773818) | |
| 3-348, gnl|dasNov1|scaffold_229904 (3400-4331) | |
| 3-348, gnl|dasNov1|scaffold_229904 (3879-4267) | |
| 3-348, gnl|echTel1|scaffold_282375 (9616-8697) | |
| 3-348, gnl|echTel1|scaffold_282375 (9138-8711) | |
| 3-348, gnl|fr1|chrUn (67202946-67203848) | |
| 3-348, gnl|fr1|chrUn (226748316-226747889) | |
| 3-348, gnl|galGal2|chr23 (1581738-1580808) | |
| 3-348, gnl|galGal2|chr23 (1581249-1580822) | |
| 3-348, gnl|hg17|chr1 (23264886-23265813) | |
| 3-348, gnl|Hg17|chr1 (23265904-23265559) | |
| 3-348, gnl|hg17|chr12 (1131969-1132272) | |
| 3-348, gnl|loxAfr1|scaffold_5874 (55546-56473) | |
| 3-348, gnl|loxAfr1|scaffold_5874 (56032-56459) | |
| 3-348, gnl|mm7|chr4 (135822024-135821097) | |
| 3-348, gnl|mm7|chr4 (135821545-135821111) | |
| 3-348, gnl|Mm7|chr4 (135821004-135821349) | |
| 3-348, gnl|monDom2|scaffold_90 (5275359-5276286) | |
| 3-348, gnl|monDom2|scaffold_90 (5275845-5276272) | |
| 3-348, gnl|oryCun1|scaffold_211505 (46514-47441) | |
| 3-348, gnl|oryCun1|scaffold_211505 (46993-47427) | |
| 3-348, gnl|panTro1|chr1 (23633484-23634411) | |
| 3-348, gnl|panTro1|chr10 (1204052-1204355) | |
| 3-348, gnl|rheMac2|chr1 (25783438-25784365) | |
| 3-348, gnl|rheMac2|chr11 (1152145-1152475) | |
| 3-348, gnl|rn3|chr5 (155199833-155198906) | |
| 3-348, gnl|rn3|chr5 (155199354-155198920) | |
| 3-348, gnl|tetNig1|chr14 (9342349-9341437) | |
| 3-348, gnl|tetNig1|chr14 (9341875-9341451) | |
| 3-348, gnl|xenTro1|scaffold_718 (325820-326747) | |
| 3-348, gnl|xenTro1|scaffold_718 (326299-326733) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |