Non-Coding RNA Search

Ss1.1-rplac_3742.5

Sequence:


               
               TCTCGAAAGCAGTCATCGTGCTCAATGAAGGCATAAAGGTGCACACAAAACAGGGAGGTT
ATTTCCATGTCCTGTTAGCTCCAGGTGTCCATAACATCAATGCCATCGCCGATGGGTATC
AGCAACAACATTCACAGGTCTTTGTGCATCACGATGCAGCTAGTTCTGTGGTGATAGTCT
TTGACACAGATAACCGGATATTTGGTTTGCCAAGGGAGCTTGTGGTAACTGTATCAGGTG
CCACCATGTCGGCATTGATCCTAACAGCTTGTATTATCTGGTGCATCTGCTCTATCAAGT
CTAACAGACACAAGGACGGCTTTCATCGGCTTAGGCAGCATCATGATGAGTATGAAGATG
AAATCCGCATGATGTCAACTGGCTCCAAGAAGTCTCTCTTAAGTCATGAGTTCCAGGATG
AAACGGACACCGAAGAGGAAACATTATATTCTAGCAAACATTGAAACACGCACTTTGCAT
CTCTCCCAGCATAAGTACAAGCAAAGTCACAGTTCCTTTTGGGAGACACTGCATTAAGAA
GAAAGACTACCTTGCTTCTTCAAAGAACTTTGGGAAGTTAACTTGCTAAATTTGTATTCT
CTGTGAATTTGACTGGCAACTTTGAACTTCCCCTCCTTAAAGTACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCGAAAGCAGTCATCGTGCTCAATGAAGGCATAAAGGTGCACACAAAACAGGGAGGTT
ATTTCCATGTCCTGTTAGCTCCAGGTGTCCATAACATCAATGCCATCGCCGATGGGTATC
AGCAACAACATTCACAGGTCTTTGTGCATCACGATGCAGCTAGTTCTGTGGTGATAGTCT
TTGACACAGATAACCGGATATTTGGTTTGCCAAGGGAGCTTGTGGTAACTGTATCAGGTG
CCACCATGTCGGCATTGATCCTAACAGCTTGTATTATCTGGTGCATCTGCTCTATCAAGT
CTAACAGACACAAGGACGGCTTTCATCGGCTTAGGCAGCATCATGATGAGTATGAAGATG
AAATCCGCATGATGTCAACTGGCTCCAAGAAGTCTCTCTTAAGTCATGAGTTCCAGGATG
AAACGGACACCGAAGAGGAAACATTATATTCTAGCAAACATTGAAACACGCACTTTGCAT
CTCTCCCAGCATAAGTACAAGCAAAGTCACAGTTCCTTTTGGGAGACACTGCATTAAGAA
GAAAGACTACCTTGCTTCTTCAAAGAACTTTGGGAAGTTAACTTGCTAAATTTGTATTCT
CTGTGAATTTGACTGGCAACTTTGAACTTCCCCTCCTTAAAGTACTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61867152|ref|XP_591905.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867152|ref|XP_591905.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               22-139, - strand, RNAz p=0.612103
               

               
               531-648, - strand, RNAz p=0.85019

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               22-139, - strand, RNAz p=0.612103
               

               
               531-648, - strand, RNAz p=0.85019

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-139, gnl|bosTau2|chr19 (15972431-15972569)
               

               
               1-139, gnl|canFam2|chr9 (47788548-47788757)
               

               
               1-139, gnl|danRer3|chr15 (31887022-31886810)
               

               
               1-139, gnl|dasNov1|scaffold_21840 (14211-14419)
               

               
               1-139, gnl|fr1|chrUn (190767677-190767477)
               

               
               1-139, gnl|galGal2|chr19 (5846986-5847197)
               

               
               1-139, gnl|hg17|chr17 (25813013-25813222)
               

               
               1-139, gnl|Hg17|chr17 (25813070-25813208)
               

               
               1-139, gnl|loxAfr1|scaffold_4002 (8382-8173)
               

               
               1-139, gnl|mm7|chr11 (76866789-76866580)
               

               
               1-139, gnl|Mm7|chr11 (76866730-76866592)
               

               
               1-139, gnl|monDom2|scaffold_86 (906903-907106)
               

               
               1-139, gnl|oryCun1|scaffold_196243 (327-536)
               

               
               1-139, gnl|panTro1|chr19 (29176551-29176760)
               

               
               1-139, gnl|rheMac2|chr16 (25705376-25705585)
               

               
               1-139, gnl|rn3|chr10 (67401605-67401814)
               

               
               1-139, gnl|xenTro1|scaffold_67 (2684071-2684271)
               


               
               235-648, gnl|bosTau2|chr19 (15974902-15975315)
               

               
               235-648, gnl|Hg17|chr17 (25815729-25816144)
               

               
               235-648, gnl|Mm7|chr11 (76863988-76863577)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-139, gnl|bosTau2|chr19 (15972431-15972569)
               

               
               1-139, gnl|canFam2|chr9 (47788548-47788757)
               

               
               1-139, gnl|danRer3|chr15 (31887022-31886810)
               

               
               1-139, gnl|dasNov1|scaffold_21840 (14211-14419)
               

               
               1-139, gnl|fr1|chrUn (190767677-190767477)
               

               
               1-139, gnl|galGal2|chr19 (5846986-5847197)
               

               
               1-139, gnl|hg17|chr17 (25813013-25813222)
               

               
               1-139, gnl|Hg17|chr17 (25813070-25813208)
               

               
               1-139, gnl|loxAfr1|scaffold_4002 (8382-8173)
               

               
               1-139, gnl|mm7|chr11 (76866789-76866580)
               

               
               1-139, gnl|Mm7|chr11 (76866730-76866592)
               

               
               1-139, gnl|monDom2|scaffold_86 (906903-907106)
               

               
               1-139, gnl|oryCun1|scaffold_196243 (327-536)
               

               
               1-139, gnl|panTro1|chr19 (29176551-29176760)
               

               
               1-139, gnl|rheMac2|chr16 (25705376-25705585)
               

               
               1-139, gnl|rn3|chr10 (67401605-67401814)
               

               
               1-139, gnl|xenTro1|scaffold_67 (2684071-2684271)
               


               
               235-648, gnl|bosTau2|chr19 (15974902-15975315)
               

               
               235-648, gnl|Hg17|chr17 (25815729-25816144)
               

               
               235-648, gnl|Mm7|chr11 (76863988-76863577)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.267344)
               

               
               tes (0.207814)
               

               
               lyg (0.133103)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               tes (0.207814)
               

               
               lyg (0.133103)

	22-139, - strand, RNAz p=0.612103
	531-648, - strand, RNAz p=0.85019

	1-139, gnl\|bosTau2\|chr19 (15972431-15972569)
	1-139, gnl\|canFam2\|chr9 (47788548-47788757)
	1-139, gnl\|danRer3\|chr15 (31887022-31886810)
	1-139, gnl\|dasNov1\|scaffold_21840 (14211-14419)
	1-139, gnl\|fr1\|chrUn (190767677-190767477)
	1-139, gnl\|galGal2\|chr19 (5846986-5847197)
	1-139, gnl\|hg17\|chr17 (25813013-25813222)
	1-139, gnl\|Hg17\|chr17 (25813070-25813208)
	1-139, gnl\|loxAfr1\|scaffold_4002 (8382-8173)
	1-139, gnl\|mm7\|chr11 (76866789-76866580)
	1-139, gnl\|Mm7\|chr11 (76866730-76866592)
	1-139, gnl\|monDom2\|scaffold_86 (906903-907106)
	1-139, gnl\|oryCun1\|scaffold_196243 (327-536)
	1-139, gnl\|panTro1\|chr19 (29176551-29176760)
	1-139, gnl\|rheMac2\|chr16 (25705376-25705585)
	1-139, gnl\|rn3\|chr10 (67401605-67401814)
	1-139, gnl\|xenTro1\|scaffold_67 (2684071-2684271)

	235-648, gnl\|bosTau2\|chr19 (15974902-15975315)
	235-648, gnl\|Hg17\|chr17 (25815729-25816144)
	235-648, gnl\|Mm7\|chr11 (76863988-76863577)