Non-Coding RNA Search

Ss1.1-rplac_3972.5

Sequence:


               
               CCCTGTGGTCGGGTCCGTGCTGAACTGTTTTCTCCGGTACAAGCTTCACAAAAGGGAAGG
ACCTTTAACCTGACGGCAGGCTCCCTGGAGTCCACGGAACACACTTACGTCTACAAAGTA
CAAGGCTCTGGAGTGACACCGCCTCAGACCCCGTCAGCCGCACGCACCAGACAGAGACTC
CCAGGCCAAAAGCCTTTTAAAAGGTCCCTGAGAGGTTCGGATGCTGTGAGTGAGACCAGC
TCGGTCAGTCACGTTGACGACTTGGAGAAGATGGAGCACCTGTCAGGCGGGCAGGACGCC
CCGGAGGCTGACAGCCCAGAGCAGCACCCCGGGCCCCCCGCTGCAGAGGCCGAGCAGCCC
AGGGCCCTCCAGGACGGGGCCCAGCGCCCGGACGATGGCCGCCCACAGGTAGAGGACCCC
GAGAGCTTAAGATAAAAGTCAGTGTTTGTTTGGAGACTATGAATATTGTGTCAGGGAAGA
TGACGTTACTCTGCAAATGTGAACTGTGCCACATGCTCATGAGAGAAATGTTATTTGTGC
TTAACTGGGATTTTTGCACAAGTGTGTGCCTGAAAGCCAGGCTCCTGGGAGGGCAGTTGA
CTTGTCTGACTTGATGGGTATAGGACAACCCCCAGCTACTGTTTGTGTTGACCCGGCCGT
AGTACTGCCGTTTCCCCCCAGCCGCCGTCAACACTTGTTATCACGAGGCACACTCTCAAG
TTCGAGTGCCTGCCGCTTGAAACACTTGCCCTTATCGTTCTCAACATACGTGTATGAAGT
TACTAGCTTGCACATAACGACTCTTTTGGTAAGACAGCTTTCTCTAGAACTTTCTGGGTT
CTCTGTTGTCCTGCTGCAGAGGAGAGACAGACAGCGTTCCTGGCCATCTGTTTCCTTGGT
GTTTAGTTTGATCCGGTCTTGATACACAACTGGATTGTGTTTGGCTTGAAGGAGAACGGG
TTTCAGAAGGGCTGTAAATAGGAGCGTCGGAAGCCCCCTCCTGCCATCCCAACTGCTGCC
TCCCCGGAGACGCAGTCAGGACTGGGTCCACTCCAGCTGTGGCAGGGTCAGAGGGCAGGT
TGGACCAGGCAGTGCTTGTGTCTGACTTACCTCTGCCACACATCCATTGCTCCCTTTATA
TATGATTTGTAAACAAATTGAAGGACTCATCTATTAAGAGGAACTGTAAAAAGTCTCCCT
GACCATATTATATATATATATATATATATATATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGTGGTCGGGTCCGTGCTGAACTGTTTTCTCCGGTACAAGCTTCACAAAAGGGAAGG
ACCTTTAACCTGACGGCAGGCTCCCTGGAGTCCACGGAACACACTTACGTCTACAAAGTA
CAAGGCTCTGGAGTGACACCGCCTCAGACCCCGTCAGCCGCACGCACCAGACAGAGACTC
CCAGGCCAAAAGCCTTTTAAAAGGTCCCTGAGAGGTTCGGATGCTGTGAGTGAGACCAGC
TCGGTCAGTCACGTTGACGACTTGGAGAAGATGGAGCACCTGTCAGGCGGGCAGGACGCC
CCGGAGGCTGACAGCCCAGAGCAGCACCCCGGGCCCCCCGCTGCAGAGGCCGAGCAGCCC
AGGGCCCTCCAGGACGGGGCCCAGCGCCCGGACGATGGCCGCCCACAGGTAGAGGACCCC
GAGAGCTTAAGATAAAAGTCAGTGTTTGTTTGGAGACTATGAATATTGTGTCAGGGAAGA
TGACGTTACTCTGCAAATGTGAACTGTGCCACATGCTCATGAGAGAAATGTTATTTGTGC
TTAACTGGGATTTTTGCACAAGTGTGTGCCTGAAAGCCAGGCTCCTGGGAGGGCAGTTGA
CTTGTCTGACTTGATGGGTATAGGACAACCCCCAGCTACTGTTTGTGTTGACCCGGCCGT
AGTACTGCCGTTTCCCCCCAGCCGCCGTCAACACTTGTTATCACGAGGCACACTCTCAAG
TTCGAGTGCCTGCCGCTTGAAACACTTGCCCTTATCGTTCTCAACATACGTGTATGAAGT
TACTAGCTTGCACATAACGACTCTTTTGGTAAGACAGCTTTCTCTAGAACTTTCTGGGTT
CTCTGTTGTCCTGCTGCAGAGGAGAGACAGACAGCGTTCCTGGCCATCTGTTTCCTTGGT
GTTTAGTTTGATCCGGTCTTGATACACAACTGGATTGTGTTTGGCTTGAAGGAGAACGGG
TTTCAGAAGGGCTGTAAATAGGAGCGTCGGAAGCCCCCTCCTGCCATCCCAACTGCTGCC
TCCCCGGAGACGCAGTCAGGACTGGGTCCACTCCAGCTGTGGCAGGGTCAGAGGGCAGGT
TGGACCAGGCAGTGCTTGTGTCTGACTTACCTCTGCCACACATCCATTGCTCCCTTTATA
TATGATTTGTAAACAAATTGAAGGACTCATCTATTAAGAGGAACTGTAAAAAGTCTCCCT
GACCATATTATATATATATATATATATATATATATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34192669|gb|AAH42104.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34192669|gb|AAH42104.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1057-1176, - strand, RNAz p=0.999859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1057-1176, - strand, RNAz p=0.999859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               178-1226, gnl|bosTau2|chr25 (14408115-14409154)
               

               
               178-1226, gnl|Hg17|chr16 (15037363-15038326)
               

               
               178-1226, gnl|Mm7|chr16 (13383136-13382229)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-1226, gnl|bosTau2|chr25 (14408115-14409154)
               

               
               178-1226, gnl|Hg17|chr16 (15037363-15038326)
               

               
               178-1226, gnl|Mm7|chr16 (13383136-13382229)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

	178-1226, gnl\|bosTau2\|chr25 (14408115-14409154)
	178-1226, gnl\|Hg17\|chr16 (15037363-15038326)
	178-1226, gnl\|Mm7\|chr16 (13383136-13382229)

	fcc (0.197785)
	fty (0.17584)
	lun (0.150489)
	liv (0.146284)
	lnt (0.142308)
	pla (0.133672)
	ute (0.132784)
	jca (0.11396)