Non-Coding RNA Search

Ss1.1-rplac_3974.5

Sequence:


               
               GCGGCCGCACGCGATCTAGAACTAGTCCACTGTAGAAACAGAAGCAAAGAAAGGAAACAA
TCTGATCTTTTCTTTATTAGATTGACTATATAAGATCTCTCCAGGAGCAATAACACAGAG
AAGTAATAAAATTATTACTTTGGCATCACTGGACATTCATCACATTGACAAGCGTGCTTT
GTGAAGCTTCTGAGTTGTGATTTGGAAACTTCATTGGTGCTCATTTGTAACTTGGACTAT
AAGCATGAGTGAATTCTGGTTATGTTTCAACTGCTGTATTGCCGAACAGCCTCAGCCTAA
AAGGCGCCGGCGGATTGACCGAAGTATGATTGGAGAGCCCACAAACTTTGTGCACACGGC
TCACGTCGGGTCAGGAGACCTATTCAGCGGAATGAATTCGGTCAGCTCCATCCAGAACCA
GATGCAGTCTAAAGGAGGCTACGGGGGCGGCATGGCTGCCAATGTGCAGATGCAGCTTGT
GGACACGAAGGCAGGATAGCCCCGGATCCTCCTCCGAACTGTGTGCTGGCACCCTGTTCA
CCCTGCTGTGATTACTCCAGTGACAAGTTACTGTTCTGCTCTGAAGATACTGTTGTCAGA
AGAATCCTGCTTTTCCTTCAGCTGGCGTGCATGCCTTTGGACTCATGGACAGAGTTCTTT
GGATTGTGGCTTAATTATTAATTTTTATCAATATGGATCTGATTTTAGCATGATCTTTTT
TGTGAATGCTACTAGCACTGTTTTGCATTTTCTCCCCATTTTTAACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCACGCGATCTAGAACTAGTCCACTGTAGAAACAGAAGCAAAGAAAGGAAACAA
TCTGATCTTTTCTTTATTAGATTGACTATATAAGATCTCTCCAGGAGCAATAACACAGAG
AAGTAATAAAATTATTACTTTGGCATCACTGGACATTCATCACATTGACAAGCGTGCTTT
GTGAAGCTTCTGAGTTGTGATTTGGAAACTTCATTGGTGCTCATTTGTAACTTGGACTAT
AAGCATGAGTGAATTCTGGTTATGTTTCAACTGCTGTATTGCCGAACAGCCTCAGCCTAA
AAGGCGCCGGCGGATTGACCGAAGTATGATTGGAGAGCCCACAAACTTTGTGCACACGGC
TCACGTCGGGTCAGGAGACCTATTCAGCGGAATGAATTCGGTCAGCTCCATCCAGAACCA
GATGCAGTCTAAAGGAGGCTACGGGGGCGGCATGGCTGCCAATGTGCAGATGCAGCTTGT
GGACACGAAGGCAGGATAGCCCCGGATCCTCCTCCGAACTGTGTGCTGGCACCCTGTTCA
CCCTGCTGTGATTACTCCAGTGACAAGTTACTGTTCTGCTCTGAAGATACTGTTGTCAGA
AGAATCCTGCTTTTCCTTCAGCTGGCGTGCATGCCTTTGGACTCATGGACAGAGTTCTTT
GGATTGTGGCTTAATTATTAATTTTTATCAATATGGATCTGATTTTAGCATGATCTTTTT
TGTGAATGCTACTAGCACTGTTTTGCATTTTCTCCCCATTTTTAACGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56800215|emb|CAI35284.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56800215|emb|CAI35284.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               413-531, + strand, RNAz p=0.992588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               413-531, + strand, RNAz p=0.992588

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               215-763, gnl|bosTau2|chrX (16044665-16044126)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-763, gnl|bosTau2|chrX (16044665-16044126)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)