Non-Coding RNA Search

Ss1.1-rplac_3983.5

Sequence:


               
               GCCCAAGCGGTGCCTCTGCCTGGCTTTCCTGCTCCTCCATCTCCTGGGACAGGTCGCTGC
GACTCAGCGCTGCCCTCCCTCGTGTCCGGCCCCCTGCCCCAAGAAGCCGCCGACCTGCGC
CCCCGGGGTGAGAGCGGTCCTGGACGACTGCTCCTGCTGCCTGGTGTGCGCCCGCCAGCG
CGGTGAGAGCTGCTCGGTGATGCTGCCTTGCGAGGAGAGCCGCGGTCTCTTCTGCGACCG
CCGAGCCGACCCCAGCGCCCAGACCGGCATCTGCATGGCAATAGAAGGAGACAACTGTGT
GTTTGACGGAGTCATCTACCAAAGTGGAGAGACCTTCCAGCCCAGCTGCAAATACCAGTG
CGCCTGTCAAGATGGACAGGTTGGCTGTGTGCCCCGCTGTGAGGAGGACCTGCTACTGCC
CCAGCCCGACTGCCCAGCTCCGAGAAAAGTCAAAGTGCCCGGGGAGTGCTGTGAAAAGTG
GATCTGTGACTCAAATGAGACGGGGACCTTAGGGGACCTCCAAACCCTTCCAGCCTACAG
GACAGAAGCCACTGTAGGAGTTGCCATCTCCGACTCAGGTACCAACTGCATTGAACAGAC
CACAGAGTGGAGTGCGTGTTCCAAGAGCTGTGGCATGGGCTTTTCCACCCGGGTCACCAA
TCGGAATCCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAAGCGGTGCCTCTGCCTGGCTTTCCTGCTCCTCCATCTCCTGGGACAGGTCGCTGC
GACTCAGCGCTGCCCTCCCTCGTGTCCGGCCCCCTGCCCCAAGAAGCCGCCGACCTGCGC
CCCCGGGGTGAGAGCGGTCCTGGACGACTGCTCCTGCTGCCTGGTGTGCGCCCGCCAGCG
CGGTGAGAGCTGCTCGGTGATGCTGCCTTGCGAGGAGAGCCGCGGTCTCTTCTGCGACCG
CCGAGCCGACCCCAGCGCCCAGACCGGCATCTGCATGGCAATAGAAGGAGACAACTGTGT
GTTTGACGGAGTCATCTACCAAAGTGGAGAGACCTTCCAGCCCAGCTGCAAATACCAGTG
CGCCTGTCAAGATGGACAGGTTGGCTGTGTGCCCCGCTGTGAGGAGGACCTGCTACTGCC
CCAGCCCGACTGCCCAGCTCCGAGAAAAGTCAAAGTGCCCGGGGAGTGCTGTGAAAAGTG
GATCTGTGACTCAAATGAGACGGGGACCTTAGGGGACCTCCAAACCCTTCCAGCCTACAG
GACAGAAGCCACTGTAGGAGTTGCCATCTCCGACTCAGGTACCAACTGCATTGAACAGAC
CACAGAGTGGAGTGCGTGTTCCAAGAGCTGTGGCATGGGCTTTTCCACCCGGGTCACCAA
TCGGAATCCACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15929146|gb|AAH15028.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15929146|gb|AAH15028.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               50-278, gnl|bosTau2|chr14 (26099972-26100200)
               

               
               50-278, gnl|Hg17|chr8 (120498162-120498390)
               

               
               50-278, gnl|Mm7|chr15 (54806287-54806517)
               


               
               282-533, gnl|bosTau2|chr14 (26101489-26101740)
               

               
               282-533, gnl|Hg17|chr8 (120499482-120499730)
               

               
               282-533, gnl|Mm7|chr15 (54807886-54808143)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-278, gnl|bosTau2|chr14 (26099972-26100200)
               

               
               50-278, gnl|Hg17|chr8 (120498162-120498390)
               

               
               50-278, gnl|Mm7|chr15 (54806287-54806517)
               


               
               282-533, gnl|bosTau2|chr14 (26101489-26101740)
               

               
               282-533, gnl|Hg17|chr8 (120499482-120499730)
               

               
               282-533, gnl|Mm7|chr15 (54807886-54808143)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               amn (0.835422)
               

               
               eye (0.341006)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               eye (0.341006)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	50-278, gnl\|bosTau2\|chr14 (26099972-26100200)
	50-278, gnl\|Hg17\|chr8 (120498162-120498390)
	50-278, gnl\|Mm7\|chr15 (54806287-54806517)

	282-533, gnl\|bosTau2\|chr14 (26101489-26101740)
	282-533, gnl\|Hg17\|chr8 (120499482-120499730)
	282-533, gnl\|Mm7\|chr15 (54807886-54808143)

	amn (0.835422)
	eye (0.341006)
	pla (0.133672)
	cly (0.120642)
	eru (0.120048)