Ss1.1-rplac_4164.5
|
GTGGCGGCGGCAGCGGTGCGGGCGGAGGGGACGCGGCGCTGGATTTCAAGTTGGCGGCTG
CCGTCCTGAGGACCGGGGGAGGAGGTAGTGCCTCTGGTAGCGACGAGGACGAGGTGTCCG
AGGTTGAATCATTTATTTTGGACCAAGAAGATCTAGATAACCCAGTGCTTAAAACAACAT
CCGAGATATTCTTATCAAGTACTGCAGAAGGAGCAGACTTACGCACCGTGGATCCAGAGA
CACAGGCACGACTAGAAGCATTGCTAGAAGCAGCAGGAATTGGCAAATTGTCAACTGCTG
ATGGTAAAGCCTTTGCAGATCCTGAGGTACTCCGAAGACTGACATCCTCAGTGAGTTGTG
CACTGGATGAAGCTGCTGCTGCACTGACACGGATGAGAGCAGAAAACAGCCACAATGCAG
GACAAGTAGACACTCGCAGTCTGGCAGAGGCTTGTTCAGATGGGGATGTGAATGCTGTTC
GTAAATTGCTAGATGAAGGCAGAAGTGTAAATGAACACACGGAGGAAGGAGAAAGCCTGC
TGTGTTTGGCGTGTTCGGCTGGGTATTATGAATTAGCACAAGTATTGCTTGCTATGCATG
CTAATGTTGAAGACAGAGGGAATAAAGGAGATATAACCCCCCTAATGGCAGCATCCAGTG
GAGGCTATTTAGATATTGTGAAATTATTACTTCTTCATGATGCAGATGTCAACTCCCAGT
CTGCAACAGGAAATACTGCACTAACTTATGCCTGTGCTGGAGGATTTGTTGACATTGTGA
AAGTGCTCCTTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GTGGCGGCGGCAGCGGTGCGGGCGGAGGGGACGCGGCGCTGGATTTCAAGTTGGCGGCTG
CCGTCCTGAGGACCGGGGGAGGAGGTAGTGCCTCTGGTAGCGACGAGGACGAGGTGTCCG
AGGTTGAATCATTTATTTTGGACCAAGAAGATCTAGATAACCCAGTGCTTAAAACAACAT
CCGAGATATTCTTATCAAGTACTGCAGAAGGAGCAGACTTACGCACCGTGGATCCAGAGA
CACAGGCACGACTAGAAGCATTGCTAGAAGCAGCAGGAATTGGCAAATTGTCAACTGCTG
ATGGTAAAGCCTTTGCAGATCCTGAGGTACTCCGAAGACTGACATCCTCAGTGAGTTGTG
CACTGGATGAAGCTGCTGCTGCACTGACACGGATGAGAGCAGAAAACAGCCACAATGCAG
GACAAGTAGACACTCGCAGTCTGGCAGAGGCTTGTTCAGATGGGGATGTGAATGCTGTTC
GTAAATTGCTAGATGAAGGCAGAAGTGTAAATGAACACACGGAGGAAGGAGAAAGCCTGC
TGTGTTTGGCGTGTTCGGCTGGGTATTATGAATTAGCACAAGTATTGCTTGCTATGCATG
CTAATGTTGAAGACAGAGGGAATAAAGGAGATATAACCCCCCTAATGGCAGCATCCAGTG
GAGGCTATTTAGATATTGTGAAATTATTACTTCTTCATGATGCAGATGTCAACTCCCAGT
CTGCAACAGGAAATACTGCACTAACTTATGCCTGTGCTGGAGGATTTGTTGACATTGTGA
AAGTGCTCCTTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
121-277, gnl|bosTau2|chr7 (30667352-30667196) |
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121-277, gnl|canFam2|chr2 (38493865-38493992) |
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121-277, gnl|danRer3|chrNA (215235546-215235673) |
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121-277, gnl|dasNov1|scaffold_43037 (44625-44498) |
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121-277, gnl|echTel1|scaffold_277920 (19617-19490) |
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121-277, gnl|fr1|chrUn (109688486-109688359) |
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121-277, gnl|galGal2|chr13 (841563-841690) |
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121-277, gnl|hg17|chr5 (139795872-139795999) |
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121-277, gnl|Hg17|chr5 (139795871-139796027) |
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121-277, gnl|loxAfr1|scaffold_186361 (185-58) |
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121-277, gnl|mm7|chr18 (36951256-36951380) |
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121-277, gnl|Mm7|chr18 (36951255-36951408) |
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121-277, gnl|monDom2|scaffold_6 (68325208-68325081) |
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121-277, gnl|oryCun1|scaffold_171884 (6149-6276) |
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121-277, gnl|panTro1|chr4 (146412004-146412131) |
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121-277, gnl|rheMac2|chr6 (136858102-136858229) |
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121-277, gnl|rn3|chr18 (29241686-29241810) |
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121-277, gnl|tetNig1|chr1 (2396880-2396753) |
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121-277, gnl|xenTro1|scaffold_307 (1285095-1284968) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
121-277, gnl|bosTau2|chr7 (30667352-30667196) |
|
121-277, gnl|canFam2|chr2 (38493865-38493992) |
|
121-277, gnl|danRer3|chrNA (215235546-215235673) |
|
121-277, gnl|dasNov1|scaffold_43037 (44625-44498) |
|
121-277, gnl|echTel1|scaffold_277920 (19617-19490) |
|
121-277, gnl|fr1|chrUn (109688486-109688359) |
|
121-277, gnl|galGal2|chr13 (841563-841690) |
|
121-277, gnl|hg17|chr5 (139795872-139795999) |
|
121-277, gnl|Hg17|chr5 (139795871-139796027) |
|
121-277, gnl|loxAfr1|scaffold_186361 (185-58) |
|
121-277, gnl|mm7|chr18 (36951256-36951380) |
|
121-277, gnl|Mm7|chr18 (36951255-36951408) |
|
121-277, gnl|monDom2|scaffold_6 (68325208-68325081) |
|
121-277, gnl|oryCun1|scaffold_171884 (6149-6276) |
|
121-277, gnl|panTro1|chr4 (146412004-146412131) |
|
121-277, gnl|rheMac2|chr6 (136858102-136858229) |
|
121-277, gnl|rn3|chr18 (29241686-29241810) |
|
121-277, gnl|tetNig1|chr1 (2396880-2396753) |
|
121-277, gnl|xenTro1|scaffold_307 (1285095-1284968) |
|
pla (0.267344) |
|
csp (0.161186) |
|
pla (0.267344) |
|
csp (0.161186) |