Non-Coding RNA Search

Ss1.1-rplac_4226.5

Sequence:


               
               TTGCAAGGTGCTGCCAAGTCTGAGCTGGGTCAAGATTGAATTGGAGGAGAATATTTATTG
AGAGCTGTTGCCAAGCACTGAGCGAGGGACTAGGAATACAATGGAAAGTAAAAACAGCGA
TTTCTTCATAAAACTGGGCCAGATTCCACATCCCTTGACTTTCTACATATTGACATCACT
CTGTCCTCTGTCCTCTGTCCTCTGGAGCAACAGAACAAGGTTAATTTCTGGTCCTCACAA
TAACCCTTCATACCCCTGAAGATGGTTTTCCATTTGCCTTTGTAGCTAAGATTTTTTTTT
TCTCCAAGATTTCTTTGTAAATATGTTACTTTCTTTAATATTGGCAAGTGACCTAAAGGT
GATGAAAGTACATGGGCTTACTTTGTCTGAGCTTCAGTTTCCTTATTTGAAAAATGAAGA
CAATTATACGCAACAGGTGACTGAAATCTTTGATATATTGTGTTATTTTTCTGAAATGGA
GTATGTGTGTGTTTTAGTTTGTATTAATAGCATTAAATAACTTCAATTGTATGCAGGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCAAGGTGCTGCCAAGTCTGAGCTGGGTCAAGATTGAATTGGAGGAGAATATTTATTG
AGAGCTGTTGCCAAGCACTGAGCGAGGGACTAGGAATACAATGGAAAGTAAAAACAGCGA
TTTCTTCATAAAACTGGGCCAGATTCCACATCCCTTGACTTTCTACATATTGACATCACT
CTGTCCTCTGTCCTCTGTCCTCTGGAGCAACAGAACAAGGTTAATTTCTGGTCCTCACAA
TAACCCTTCATACCCCTGAAGATGGTTTTCCATTTGCCTTTGTAGCTAAGATTTTTTTTT
TCTCCAAGATTTCTTTGTAAATATGTTACTTTCTTTAATATTGGCAAGTGACCTAAAGGT
GATGAAAGTACATGGGCTTACTTTGTCTGAGCTTCAGTTTCCTTATTTGAAAAATGAAGA
CAATTATACGCAACAGGTGACTGAAATCTTTGATATATTGTGTTATTTTTCTGAAATGGA
GTATGTGTGTGTTTTAGTTTGTATTAATAGCATTAAATAACTTCAATTGTATGCAGGTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-236, + strand, RNAz p=0.950089

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-236, + strand, RNAz p=0.950089

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               50-534, gnl|bosTau2|chr8 (22715653-22715185)
               

               
               50-534, gnl|Hg17|chr9 (71626222-71625749)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-534, gnl|bosTau2|chr8 (22715653-22715185)
               

               
               50-534, gnl|Hg17|chr9 (71626222-71625749)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               lyg (0.133103)

	50-534, gnl\|bosTau2\|chr8 (22715653-22715185)
	50-534, gnl\|Hg17\|chr9 (71626222-71625749)