Non-Coding RNA Search

Ss1.1-rplac_4464.5

Sequence:


               
               CTCCTTCACTTGAGCAAGATGATGTCACAGAAAGGGTGTTGACTTCAGGGTCTGATTTGA
GCCTTGGTGCTATCAATTACTGTGTCAGTTTGGGCAAGGCACGTGGTTGCCCTAGATTGC
TTCATTTATAAAAAGAGGATTGTAATTCCTGACCTGCCTACCTCACAGGGCTGTTGTGGG
GATCCAATGAGAAGGGATACAGGTTAATACGGTTTTGTAAGGTGAAAAATATTGTACGAG
GGGAAAGAATTAAGGAATTTAAGTGCCTAGGTTGTGGATTATTTTTCAAACGACTGAAAA
GAGAGAACACTTAAGAAATGGCTTTCTTGCCTTAACCAGCCTCTCAAGTGAAGAGACACT
CAAGTGAGATTCAGCTAACTAACTGAAAATGTTTCTAGAGCAGTCTTAGTCTTCTTCAGT
CAGTATGGTCTGATGCTTTTTGTGGCTAAGCTTTTCTCCTTTCAGGAATGCAGACTTGAC
CTAGGACAAGCTTGCAGATGTAATGGGTTAAATAGAAGTGTAAGTGTTGGTAAAGCAAAG
AATGGAAGATTTGTTGAATTGTATTACCTTGTGAGGGTAGACAAGGTGAATGAATATCTG
TTAAGTGGTGTCATCAGAGGTGTTGCTATTAGCTGGCAGCTGTCACTGCTAGACTAGGTA
GTTTGGGGATGGAATTCACAGTGAAAGCATGTAGAGGAAGTCATCCAAAGGGATGCATTT
TAGGATTTGAACCCAGTCAATTTCAGTGTATCTTCCAAACCTGAAGTCTATGCCCCTGGA
ATGTATAATTTAAAGAGTCTCTGCTACCTACATAGATCCTAATGATGGGCAAAAATACAT
GTGGTTACTAGTGGCTAGACTCAAAAAAGAAATCTACCATCCAAGGTGGCCAACAAAATT
GTTAACAGAATTTATCCGATTTTGATATTTTTGTACTCTGCTACCTTACCTGGAAACAAA
CAAATAGATGTTTTGGGGGTTTTGTAATAGGAATTTGTATAAAGCATTACTCTTTTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTTCACTTGAGCAAGATGATGTCACAGAAAGGGTGTTGACTTCAGGGTCTGATTTGA
GCCTTGGTGCTATCAATTACTGTGTCAGTTTGGGCAAGGCACGTGGTTGCCCTAGATTGC
TTCATTTATAAAAAGAGGATTGTAATTCCTGACCTGCCTACCTCACAGGGCTGTTGTGGG
GATCCAATGAGAAGGGATACAGGTTAATACGGTTTTGTAAGGTGAAAAATATTGTACGAG
GGGAAAGAATTAAGGAATTTAAGTGCCTAGGTTGTGGATTATTTTTCAAACGACTGAAAA
GAGAGAACACTTAAGAAATGGCTTTCTTGCCTTAACCAGCCTCTCAAGTGAAGAGACACT
CAAGTGAGATTCAGCTAACTAACTGAAAATGTTTCTAGAGCAGTCTTAGTCTTCTTCAGT
CAGTATGGTCTGATGCTTTTTGTGGCTAAGCTTTTCTCCTTTCAGGAATGCAGACTTGAC
CTAGGACAAGCTTGCAGATGTAATGGGTTAAATAGAAGTGTAAGTGTTGGTAAAGCAAAG
AATGGAAGATTTGTTGAATTGTATTACCTTGTGAGGGTAGACAAGGTGAATGAATATCTG
TTAAGTGGTGTCATCAGAGGTGTTGCTATTAGCTGGCAGCTGTCACTGCTAGACTAGGTA
GTTTGGGGATGGAATTCACAGTGAAAGCATGTAGAGGAAGTCATCCAAAGGGATGCATTT
TAGGATTTGAACCCAGTCAATTTCAGTGTATCTTCCAAACCTGAAGTCTATGCCCCTGGA
ATGTATAATTTAAAGAGTCTCTGCTACCTACATAGATCCTAATGATGGGCAAAAATACAT
GTGGTTACTAGTGGCTAGACTCAAAAAAGAAATCTACCATCCAAGGTGGCCAACAAAATT
GTTAACAGAATTTATCCGATTTTGATATTTTTGTACTCTGCTACCTTACCTGGAAACAAA
CAAATAGATGTTTTGGGGGTTTTGTAATAGGAATTTGTATAAAGCATTACTCTTTTTCAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1020, gnl|bosTau2|chr1 (46880150-46881160)
               

               
               1-1020, gnl|Hg17|chr3 (191507203-191506223)
               

               
               1-1020, gnl|Mm7|chr16 (26019200-26018208)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1020, gnl|bosTau2|chr1 (46880150-46881160)
               

               
               1-1020, gnl|Hg17|chr3 (191507203-191506223)
               

               
               1-1020, gnl|Mm7|chr16 (26019200-26018208)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               ski (0.880411)
               

               
               ret (0.514933)
               

               
               sug (0.381874)
               

               
               lun (0.300978)
               

               
               tra (0.246184)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.880411)
               

               
               ret (0.514933)
               

               
               sug (0.381874)
               

               
               lun (0.300978)
               

               
               tra (0.246184)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

	1-1020, gnl\|bosTau2\|chr1 (46880150-46881160)
	1-1020, gnl\|Hg17\|chr3 (191507203-191506223)
	1-1020, gnl\|Mm7\|chr16 (26019200-26018208)

	ski (0.880411)
	ret (0.514933)
	sug (0.381874)
	lun (0.300978)
	tra (0.246184)
	rec (0.17307)
	cut (0.169924)
	liv (0.146284)
	csk (0.140746)
	pla (0.133672)
	bla (0.124347)