Non-Coding RNA Search

Ss1.1-rplac_4525.5

Sequence:


               
               CCTGTTTGCTCGGGAATGTGTAAAGAGAGAATCATTTTTATATGGCCATCAGGGAAGCAG
CAATATGCCACTGTACAGAACTGAACGAAAAGCCCTAATTTGTATTTTCTTTGCAAGGTG
AGGTCAAAGGTTGTTTAGGGAATATGCATTTTGTCAAAGAGGAAAGAAGATAAAACAGTG
CCAGTTGTATGCCAGTAGCTTCTAGAATTTCAGGACTGCTTGGTGTCAGCTGATCTGCGT
AGATTCACACAGCAGAGNGGGTTGAGAACTCCCTGCCGGATCCTGGTCTCAGTGAGTCAC
CGGGATGGAGCATCTGCTTGGCCACGGGCAGGTGCGGTGACCACTCCAGCAGTTCGCTCT
TGACTTCAGAAACTATTATTGGTGTTGAAAGATGTGGATATATATTGTGGAGAAACCTAT
ACGCCACTAGAAGGTAAAGAAAAATTACAGAATGAAAAATGATGTTTTAGGTGACAAATG
AGTTGAGAATCTAAAGAGTAGATTTTTTTAAAAGCCAGCTGTGAGTTCAGATCTGTCATG
TTATTAGATTTTTAATATTGCAACAACCCTTAATTTTCTACAGTAAAAGAACTAGAAATT
ACTGGATAGTTAATCCAGTAATGGGTCATTGTATGCCAAAAATCTAATTGTATTTAGGAG
TTTGAATTTTTCTTCCCACCCAACTTTCATTTTCTTCTGGGGATGCCTATTAATTTAAAG
ACATAATTTGAGTTGTTTATTAGTTTCTCTTGCCTATGTATATTTATGACTGTTAATGAG
TAGTGAAAAGATTTGGAAAGACAGCTTCAGGAAGAAGAAACAAAACCCTGAAAAATCCCT
GGGCTAGAGGAGGAATCCATGAAAAATCAAGAGTTGATGGTGTTGTAAGTTTTCTCAAGC
CTTTTTGTGAAAATGAAATGTTCAATCACCAGATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTTTGCTCGGGAATGTGTAAAGAGAGAATCATTTTTATATGGCCATCAGGGAAGCAG
CAATATGCCACTGTACAGAACTGAACGAAAAGCCCTAATTTGTATTTTCTTTGCAAGGTG
AGGTCAAAGGTTGTTTAGGGAATATGCATTTTGTCAAAGAGGAAAGAAGATAAAACAGTG
CCAGTTGTATGCCAGTAGCTTCTAGAATTTCAGGACTGCTTGGTGTCAGCTGATCTGCGT
AGATTCACACAGCAGAGNGGGTTGAGAACTCCCTGCCGGATCCTGGTCTCAGTGAGTCAC
CGGGATGGAGCATCTGCTTGGCCACGGGCAGGTGCGGTGACCACTCCAGCAGTTCGCTCT
TGACTTCAGAAACTATTATTGGTGTTGAAAGATGTGGATATATATTGTGGAGAAACCTAT
ACGCCACTAGAAGGTAAAGAAAAATTACAGAATGAAAAATGATGTTTTAGGTGACAAATG
AGTTGAGAATCTAAAGAGTAGATTTTTTTAAAAGCCAGCTGTGAGTTCAGATCTGTCATG
TTATTAGATTTTTAATATTGCAACAACCCTTAATTTTCTACAGTAAAAGAACTAGAAATT
ACTGGATAGTTAATCCAGTAATGGGTCATTGTATGCCAAAAATCTAATTGTATTTAGGAG
TTTGAATTTTTCTTCCCACCCAACTTTCATTTTCTTCTGGGGATGCCTATTAATTTAAAG
ACATAATTTGAGTTGTTTATTAGTTTCTCTTGCCTATGTATATTTATGACTGTTAATGAG
TAGTGAAAAGATTTGGAAAGACAGCTTCAGGAAGAAGAAACAAAACCCTGAAAAATCCCT
GGGCTAGAGGAGGAATCCATGAAAAATCAAGAGTTGATGGTGTTGTAAGTTTTCTCAAGC
CTTTTTGTGAAAATGAAATGTTCAATCACCAGATGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               9-936, gnl|bosTau2|chr16 (53730869-53731791)
               

               
               9-936, gnl|Hg17|chr1 (208308948-208308007)
               

               
               9-936, gnl|Mm7|chr1 (191333726-191334578)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-936, gnl|bosTau2|chr16 (53730869-53731791)
               

               
               9-936, gnl|Hg17|chr1 (208308948-208308007)
               

               
               9-936, gnl|Mm7|chr1 (191333726-191334578)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               spc (0.113366)

	9-936, gnl\|bosTau2\|chr16 (53730869-53731791)
	9-936, gnl\|Hg17\|chr1 (208308948-208308007)
	9-936, gnl\|Mm7\|chr1 (191333726-191334578)