Non-Coding RNA Search

Ss1.1-rplac_4812.5

Sequence:


               
               GCGGCCGCTTGAGCAGGTGGAGAACATCAAGCCGGAGATCGTGTCCGTGACGGCCGCGTG
CGAGGAGACGCGCAAGAGCGAGAGCTTCGCCAGCCTCCTGGAGCTCACCCTGCTGGTGGG
CAACTACATGAACGCCGGCTCCAGGAACGCCGGGGCCTTCGGCTTCAGCATCAGCTTCCT
CTGCAAGCTCCGGGACACCAAGTCCACGGATCAGAAGATGACGCTGTTGCACTTCTTGGC
CGAGCTGTGTGAGAATGACCACCCCGACGTCCTCAGGTTTCCGGAGGAGCTGGCCCACGT
GGAGAAAGCCAGCCGAGTTTCTGCTGAAAACTTGCAGAAGAACCTGGACCAGATGAAGAA
ACAGATTGCCGATGTGGAACGTGACATTCAGAATTTCCCAGCTGCCACAGACGAGAAAGA
CAAGTTTGTGGAGAAAATGACCAGCTTCGTGAAGGATGCCCAGGAGCAGTATAACAAGCT
GCGGCTGATGCATTCCAACATGGAGACCCTCTACAAGGAGCTGGGCGAGTACTTCCTCTT
TGACCCCAAGAAGGTGGCTGTGGAGGAATTCTTCATGGATCTGCACAACTTTAAGAATAT
GTTCGTGCAAGCAGTCAAGGAGAACCAGAAGCGGCGGGAGACGGAGGAAAAGATGCGACG
AGCCAAACTAGCCAAGGAGAAGGCGGAGAAGGAGCGGCTGGAGAAGCAGCAGAAGAGAGA
GCAGCTCATAGACATGAATGCTGAGGGTGATGAGACGGGTGTGATGGACAGTCTTCTGGA
AGCCCTGCAGTCAGGCGCGGCGTTCCGGCGGAAGAGAGGACCTCGCCAGGCCAACAAGAA
GGTCGCCTGTGCAGTCACCTTGGAGGGGCTCAAGGACGACGCCCTGGCCTCCGTTCCTGC
CAAGATATCCCGGAAGAGCGAGCAGGTGCCCACCATCCTGGAGGAGCCCAAGGAGCTGCT
CGGCCGTGCGAGCTAAGCCAGGTCTCGGGGCCACGGCCGCTCCTGCGCGGAGCCCCGGAC
TGTCCCGCCCGGCAGCGCGGGCCTGAGGNTCCCGGAGCTGCTCCTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTTGAGCAGGTGGAGAACATCAAGCCGGAGATCGTGTCCGTGACGGCCGCGTG
CGAGGAGACGCGCAAGAGCGAGAGCTTCGCCAGCCTCCTGGAGCTCACCCTGCTGGTGGG
CAACTACATGAACGCCGGCTCCAGGAACGCCGGGGCCTTCGGCTTCAGCATCAGCTTCCT
CTGCAAGCTCCGGGACACCAAGTCCACGGATCAGAAGATGACGCTGTTGCACTTCTTGGC
CGAGCTGTGTGAGAATGACCACCCCGACGTCCTCAGGTTTCCGGAGGAGCTGGCCCACGT
GGAGAAAGCCAGCCGAGTTTCTGCTGAAAACTTGCAGAAGAACCTGGACCAGATGAAGAA
ACAGATTGCCGATGTGGAACGTGACATTCAGAATTTCCCAGCTGCCACAGACGAGAAAGA
CAAGTTTGTGGAGAAAATGACCAGCTTCGTGAAGGATGCCCAGGAGCAGTATAACAAGCT
GCGGCTGATGCATTCCAACATGGAGACCCTCTACAAGGAGCTGGGCGAGTACTTCCTCTT
TGACCCCAAGAAGGTGGCTGTGGAGGAATTCTTCATGGATCTGCACAACTTTAAGAATAT
GTTCGTGCAAGCAGTCAAGGAGAACCAGAAGCGGCGGGAGACGGAGGAAAAGATGCGACG
AGCCAAACTAGCCAAGGAGAAGGCGGAGAAGGAGCGGCTGGAGAAGCAGCAGAAGAGAGA
GCAGCTCATAGACATGAATGCTGAGGGTGATGAGACGGGTGTGATGGACAGTCTTCTGGA
AGCCCTGCAGTCAGGCGCGGCGTTCCGGCGGAAGAGAGGACCTCGCCAGGCCAACAAGAA
GGTCGCCTGTGCAGTCACCTTGGAGGGGCTCAAGGACGACGCCCTGGCCTCCGTTCCTGC
CAAGATATCCCGGAAGAGCGAGCAGGTGCCCACCATCCTGGAGGAGCCCAAGGAGCTGCT
CGGCCGTGCGAGCTAAGCCAGGTCTCGGGGCCACGGCCGCTCCTGCGCGGAGCCCCGGAC
TGTCCCGCCCGGCAGCGCGGGCCTGAGGNTCCCGGAGCTGCTCCTCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30583475|gb|AAP35982.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30583475|gb|AAP35982.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               51-197, + strand, RNAz p=0.617929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-197, + strand, RNAz p=0.617929

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               11-197, gnl|bosTau2|chr7 (35351848-35351660)
               

               
               11-197, gnl|Hg17|chr5 (140888629-140888427)
               

               
               11-197, gnl|Mm7|chr18 (38232093-38231892)
               


               
               442-614, gnl|bosTau2|chr7 (35349983-35349810)
               

               
               442-614, gnl|Hg17|chr5 (140886213-140886040)
               

               
               442-614, gnl|Mm7|chr18 (38229913-38229740)
               


               
               871-1066, gnl|bosTau2|chr7 (35341879-35341687)
               

               
               871-1066, gnl|Hg17|chr5 (140876707-140876511)
               

               
               871-1066, gnl|Mm7|chr18 (38221650-38221463)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-197, gnl|bosTau2|chr7 (35351848-35351660)
               

               
               11-197, gnl|Hg17|chr5 (140888629-140888427)
               

               
               11-197, gnl|Mm7|chr18 (38232093-38231892)
               


               
               442-614, gnl|bosTau2|chr7 (35349983-35349810)
               

               
               442-614, gnl|Hg17|chr5 (140886213-140886040)
               

               
               442-614, gnl|Mm7|chr18 (38229913-38229740)
               


               
               871-1066, gnl|bosTau2|chr7 (35341879-35341687)
               

               
               871-1066, gnl|Hg17|chr5 (140876707-140876511)
               

               
               871-1066, gnl|Mm7|chr18 (38221650-38221463)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	11-197, gnl\|bosTau2\|chr7 (35351848-35351660)
	11-197, gnl\|Hg17\|chr5 (140888629-140888427)
	11-197, gnl\|Mm7\|chr18 (38232093-38231892)

	442-614, gnl\|bosTau2\|chr7 (35349983-35349810)
	442-614, gnl\|Hg17\|chr5 (140886213-140886040)
	442-614, gnl\|Mm7\|chr18 (38229913-38229740)

	871-1066, gnl\|bosTau2\|chr7 (35341879-35341687)
	871-1066, gnl\|Hg17\|chr5 (140876707-140876511)
	871-1066, gnl\|Mm7\|chr18 (38221650-38221463)