Non-Coding RNA Search

Ss1.1-rplac_4837.5

Sequence:


               
               CTGGTTGTGGTCACCATGGCAACCTTGTCTCTGGCCCGGCCCTCCTTCAATTTAGTTGAG
GATACCACGGTGGAGCCGGAAGAGCCACCAACCAAATACCAAATCTCCCAACCAGAAGTT
TACGTGGCTGCGCCCCGGGAGTCGCTAGAGTTGCGCTGCCTGTTGCGAGATGCCGCCGTG
ATCAGTTGGACTAAGGATGGGGTACACTTGGGGCCCAACAATAGGACAGTGCTTATTGGG
GAGTACTTGCAGATAAAAGGTGCCACGCCTAGGGACTCCGGCCTCTATGCTTGTACCGCT
GCTAGGAGTGTAGACAGTGAGACTGTCTACTTCATGGTCAATGTCACAGATGCCATCTCG
TCCGGAGATGACGAGGACGACACCGATGGCTCAGAGGATTTTGTCAGTGAGAACAGTAAC
AGCAAGAGTAAGTAATCGCTGCCTCCAGAGGTCCCCGCGTGAGGAGAGCTTGGTGGGAAG
TCCTGACTCTAAGCTGTCTTCCTGTCGCCTCTCTGGGATGCTGTTACCTGCAGCCCTCCC
CTTTCTCCGCCGTGTCTGTGCCCTTGACTTGCAAATCTGAGAATAAACCAATGTTTCTGT
ACACCCTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTTGTGGTCACCATGGCAACCTTGTCTCTGGCCCGGCCCTCCTTCAATTTAGTTGAG
GATACCACGGTGGAGCCGGAAGAGCCACCAACCAAATACCAAATCTCCCAACCAGAAGTT
TACGTGGCTGCGCCCCGGGAGTCGCTAGAGTTGCGCTGCCTGTTGCGAGATGCCGCCGTG
ATCAGTTGGACTAAGGATGGGGTACACTTGGGGCCCAACAATAGGACAGTGCTTATTGGG
GAGTACTTGCAGATAAAAGGTGCCACGCCTAGGGACTCCGGCCTCTATGCTTGTACCGCT
GCTAGGAGTGTAGACAGTGAGACTGTCTACTTCATGGTCAATGTCACAGATGCCATCTCG
TCCGGAGATGACGAGGACGACACCGATGGCTCAGAGGATTTTGTCAGTGAGAACAGTAAC
AGCAAGAGTAAGTAATCGCTGCCTCCAGAGGTCCCCGCGTGAGGAGAGCTTGGTGGGAAG
TCCTGACTCTAAGCTGTCTTCCTGTCGCCTCTCTGGGATGCTGTTACCTGCAGCCCTCCC
CTTTCTCCGCCGTGTCTGTGCCCTTGACTTGCAAATCTGAGAATAAACCAATGTTTCTGT
ACACCCTTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BDL9_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BDL9_CANFA

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               81-352, gnl|bosTau2|chr26 (28879938-28880209)
               

               
               81-352, gnl|canFam2|chr28 (34382853-34383152)
               

               
               81-352, gnl|dasNov1|scaffold_56732 (3891-3596)
               

               
               81-352, gnl|echTel1|scaffold_175244 (1087-788)
               

               
               81-352, gnl|fr1|chrUn (278526005-278525715)
               

               
               81-352, gnl|galGal2|chr6 (29960416-29960711)
               

               
               81-352, gnl|hg17|chr10 (123314933-123315232)
               

               
               81-352, gnl|Hg17|chr10 (123315210-123314939)
               

               
               81-352, gnl|loxAfr1|scaffold_1219 (52378-52079)
               

               
               81-352, gnl|mm7|chr7 (126407631-126407931)
               

               
               81-352, gnl|Mm7|chr7 (126407908-126407637)
               

               
               81-352, gnl|monDom2|scaffold_14 (37967978-37967677)
               

               
               81-352, gnl|oryCun1|scaffold_188203 (27546-27849)
               

               
               81-352, gnl|panTro1|chr8 (125640238-125640537)
               

               
               81-352, gnl|rheMac2|chr9 (121186924-121187223)
               

               
               81-352, gnl|rn3|chr1 (189714639-189714939)
               

               
               81-352, gnl|tetNig1|chr17 (1368714-1369004)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-352, gnl|bosTau2|chr26 (28879938-28880209)
               

               
               81-352, gnl|canFam2|chr28 (34382853-34383152)
               

               
               81-352, gnl|dasNov1|scaffold_56732 (3891-3596)
               

               
               81-352, gnl|echTel1|scaffold_175244 (1087-788)
               

               
               81-352, gnl|fr1|chrUn (278526005-278525715)
               

               
               81-352, gnl|galGal2|chr6 (29960416-29960711)
               

               
               81-352, gnl|hg17|chr10 (123314933-123315232)
               

               
               81-352, gnl|Hg17|chr10 (123315210-123314939)
               

               
               81-352, gnl|loxAfr1|scaffold_1219 (52378-52079)
               

               
               81-352, gnl|mm7|chr7 (126407631-126407931)
               

               
               81-352, gnl|Mm7|chr7 (126407908-126407637)
               

               
               81-352, gnl|monDom2|scaffold_14 (37967978-37967677)
               

               
               81-352, gnl|oryCun1|scaffold_188203 (27546-27849)
               

               
               81-352, gnl|panTro1|chr8 (125640238-125640537)
               

               
               81-352, gnl|rheMac2|chr9 (121186924-121187223)
               

               
               81-352, gnl|rn3|chr1 (189714639-189714939)
               

               
               81-352, gnl|tetNig1|chr17 (1368714-1369004)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pla (0.133672)

	81-352, gnl\|bosTau2\|chr26 (28879938-28880209)
	81-352, gnl\|canFam2\|chr28 (34382853-34383152)
	81-352, gnl\|dasNov1\|scaffold_56732 (3891-3596)
	81-352, gnl\|echTel1\|scaffold_175244 (1087-788)
	81-352, gnl\|fr1\|chrUn (278526005-278525715)
	81-352, gnl\|galGal2\|chr6 (29960416-29960711)
	81-352, gnl\|hg17\|chr10 (123314933-123315232)
	81-352, gnl\|Hg17\|chr10 (123315210-123314939)
	81-352, gnl\|loxAfr1\|scaffold_1219 (52378-52079)
	81-352, gnl\|mm7\|chr7 (126407631-126407931)
	81-352, gnl\|Mm7\|chr7 (126407908-126407637)
	81-352, gnl\|monDom2\|scaffold_14 (37967978-37967677)
	81-352, gnl\|oryCun1\|scaffold_188203 (27546-27849)
	81-352, gnl\|panTro1\|chr8 (125640238-125640537)
	81-352, gnl\|rheMac2\|chr9 (121186924-121187223)
	81-352, gnl\|rn3\|chr1 (189714639-189714939)
	81-352, gnl\|tetNig1\|chr17 (1368714-1369004)