Non-Coding RNA Search

Ss1.1-rplac_4931.5

Sequence:


               
               TAAGCTGTGAACGGGTTTTTTAAAAAAATCATTCCTTCCTAATACATTTTGCGTGTGTTT
CGTAGCTGATTAACGCCAGCTATGGGAACATATAATGCCTTTTTATTCATGTTAATTACC
AGTATAAATGGCTAACCTTTCTGTCTTATTTATCTTCATGTTATATTAGTTTACATACAG
GGGTTGTGTGTTTATGCTGTAACTGTTCCCTCCTTCGTTTGAAAGACTCTCTTGGGTCCT
CTGCGTTTCCTTCGGCCACAGGTTTGCGTCCCAGCCTGGCCTTCGTGCTGTCGCCTGATT
TGCAGGATCTGTGTCTCATCTGTTGGTTGTGTACTCTCACCCTTTCCTCACTTGGGTGTC
TCCTATAATTGGAACGTACACCTATGAGGAGAATGTTTGACATGTGTTCCTTTGAGTTCT
GTTTAGTAGTTAGGATTGCTCTTTGGTTTGGACCAAGAAAAGGAAATCACCCCCCTTTTC
GCTTATTTCTTGGTTTGAGGACAGTTCTTCTACAAGAGAGAGGAAAGTGAAATCCTTCAT
GTTTTATCTGCAGTGGGTTCATGGCCCCAGGTTACTCCTCTGAACCTTGGGGTGATTCAC
ACACACATCCTCTCCTCTCTTGCTGCCAAAGGTTTGGGTTTAGTTTGCTTCAGTTCCGCT
CAAGCATTGAGAAGGTTCTCATGGAGTCTGGGGTATGCCCAGTAAAAAGATGGGGACCTT
TTAATTGTCCACAGACCTCTGTATACCTGCTTTGCAAAAATTACAATGGAGTAATATTTT
TAAAGCTTATTTTTCAATTCATAAAAGAAGAATTTATTTTCAGTCAAATGGATGACATCT
CCCTTTTGTCCCTTAATCCTCGATGTTTGCTTGTTTTTTTTGTTGTTGTGGTTGGTTTTT
TTTTTCAATTCTTCCCCATGCCCACTTCTTGATACCTTGGGTTCTCTTTCCTGCTCAGGT
CCCTTCATTTGTACTTTGGAGTTTTTCTCATGTAAATTTGTACAATGGAAAATATTGTTC
AGTTTGGATAGAAAGCATGGAGAATTAAATTTTAAAAAAGATAGCTGAAATTCAGATTGA
AGAAATTTATTCTGTGTAAAGTTATTTAAAAACTCTGTATTATATAAAAGGCAAAAAAGT
TCTATGTACTTGATGTGAATATGCGAATACTGCTATAATAAAGATTGACTGCATGGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGCTGTGAACGGGTTTTTTAAAAAAATCATTCCTTCCTAATACATTTTGCGTGTGTTT
CGTAGCTGATTAACGCCAGCTATGGGAACATATAATGCCTTTTTATTCATGTTAATTACC
AGTATAAATGGCTAACCTTTCTGTCTTATTTATCTTCATGTTATATTAGTTTACATACAG
GGGTTGTGTGTTTATGCTGTAACTGTTCCCTCCTTCGTTTGAAAGACTCTCTTGGGTCCT
CTGCGTTTCCTTCGGCCACAGGTTTGCGTCCCAGCCTGGCCTTCGTGCTGTCGCCTGATT
TGCAGGATCTGTGTCTCATCTGTTGGTTGTGTACTCTCACCCTTTCCTCACTTGGGTGTC
TCCTATAATTGGAACGTACACCTATGAGGAGAATGTTTGACATGTGTTCCTTTGAGTTCT
GTTTAGTAGTTAGGATTGCTCTTTGGTTTGGACCAAGAAAAGGAAATCACCCCCCTTTTC
GCTTATTTCTTGGTTTGAGGACAGTTCTTCTACAAGAGAGAGGAAAGTGAAATCCTTCAT
GTTTTATCTGCAGTGGGTTCATGGCCCCAGGTTACTCCTCTGAACCTTGGGGTGATTCAC
ACACACATCCTCTCCTCTCTTGCTGCCAAAGGTTTGGGTTTAGTTTGCTTCAGTTCCGCT
CAAGCATTGAGAAGGTTCTCATGGAGTCTGGGGTATGCCCAGTAAAAAGATGGGGACCTT
TTAATTGTCCACAGACCTCTGTATACCTGCTTTGCAAAAATTACAATGGAGTAATATTTT
TAAAGCTTATTTTTCAATTCATAAAAGAAGAATTTATTTTCAGTCAAATGGATGACATCT
CCCTTTTGTCCCTTAATCCTCGATGTTTGCTTGTTTTTTTTGTTGTTGTGGTTGGTTTTT
TTTTTCAATTCTTCCCCATGCCCACTTCTTGATACCTTGGGTTCTCTTTCCTGCTCAGGT
CCCTTCATTTGTACTTTGGAGTTTTTCTCATGTAAATTTGTACAATGGAAAATATTGTTC
AGTTTGGATAGAAAGCATGGAGAATTAAATTTTAAAAAAGATAGCTGAAATTCAGATTGA
AGAAATTTATTCTGTGTAAAGTTATTTAAAAACTCTGTATTATATAAAAGGCAAAAAAGT
TCTATGTACTTGATGTGAATATGCGAATACTGCTATAATAAAGATTGACTGCATGGAGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-160, - strand, RNAz p=0.913739
               

               
               663-781, - strand, RNAz p=0.622628

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-160, - strand, RNAz p=0.913739
               

               
               663-781, - strand, RNAz p=0.622628

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1200, gnl|bosTau2|chr27 (12080006-12078801)
               

               
               1-1200, gnl|Hg17|chr7 (139873546-139872318)
               

               
               1-1200, gnl|Mm7|chr6 (39534490-39533263)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1200, gnl|bosTau2|chr27 (12080006-12078801)
               

               
               1-1200, gnl|Hg17|chr7 (139873546-139872318)
               

               
               1-1200, gnl|Mm7|chr6 (39534490-39533263)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               vin (0.665115)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)

	1-160, - strand, RNAz p=0.913739
	663-781, - strand, RNAz p=0.622628

	1-1200, gnl\|bosTau2\|chr27 (12080006-12078801)
	1-1200, gnl\|Hg17\|chr7 (139873546-139872318)
	1-1200, gnl\|Mm7\|chr6 (39534490-39533263)

	vin (0.665115)
	nca (0.273748)
	fce (0.271592)
	pla (0.267344)
	aor (0.195274)
	eye (0.170503)
	nje (0.16592)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)