Non-Coding RNA Search

Ss1.1-rplac_4943.5

Sequence:


               
               CAGACAGTGCGTGTTTGTTACCCAGAGGGGCCACTGTCCCCAAACGCAGGGAAGGCTTGA
AAGTGGAGCCTAACCACTGGCCGGGGGTGGGGGGACACATCAGGGACCAGCCCAAAATCG
TGGCTTCTAGGCCTGAGCCGGCTCCGGGGATGGCGATGATGAAGGGCCACGCAGAGCGAG
GTCCCCAGGGGCTAGGCTTGTGCGACGGATGCCCTCCTGGTACTTGCGGCGGCCAAGCTC
CAAAACAGCCCGCACTTCTTCTGCCACGTCTCGCCGGTCACTCTGCTCCAGGGCCTGCAC
TAGGAGCCCCACAGCTCCTGGCTGCCCCGCCTGGCGCTCGGCCCAGGAGAAGAGCATATG
ACGGATCTGCCCATCCAGGTCGTCCCGGAACTCGTGGCGGATGCGCTGCAGCTGGCGGTA
GGGCACGCCCAGGTGCAGGGCCACGGCCGGCCAGTCCGGGCCCAGGCGTCCGGCCACATT
CAGCAGGTTACTCTGGGTCAGGAAGCCGGTCTCAGCATCGCCCAGGTTCAGAGGGGCCAG
GGAGAGGCCAGGCCCCTGCGCTGGCTCCTCAGAGCCCCGCAGTCTCGGCAGCTTGATGGG
CAGCGTGGCCATCCACAGGGCGTCTGCCCCCCTCCTCTGCCGGCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACAGTGCGTGTTTGTTACCCAGAGGGGCCACTGTCCCCAAACGCAGGGAAGGCTTGA
AAGTGGAGCCTAACCACTGGCCGGGGGTGGGGGGACACATCAGGGACCAGCCCAAAATCG
TGGCTTCTAGGCCTGAGCCGGCTCCGGGGATGGCGATGATGAAGGGCCACGCAGAGCGAG
GTCCCCAGGGGCTAGGCTTGTGCGACGGATGCCCTCCTGGTACTTGCGGCGGCCAAGCTC
CAAAACAGCCCGCACTTCTTCTGCCACGTCTCGCCGGTCACTCTGCTCCAGGGCCTGCAC
TAGGAGCCCCACAGCTCCTGGCTGCCCCGCCTGGCGCTCGGCCCAGGAGAAGAGCATATG
ACGGATCTGCCCATCCAGGTCGTCCCGGAACTCGTGGCGGATGCGCTGCAGCTGGCGGTA
GGGCACGCCCAGGTGCAGGGCCACGGCCGGCCAGTCCGGGCCCAGGCGTCCGGCCACATT
CAGCAGGTTACTCTGGGTCAGGAAGCCGGTCTCAGCATCGCCCAGGTTCAGAGGGGCCAG
GGAGAGGCCAGGCCCCTGCGCTGGCTCCTCAGAGCCCCGCAGTCTCGGCAGCTTGATGGG
CAGCGTGGCCATCCACAGGGCGTCTGCCCCCCTCCTCTGCCGGCAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61861102|ref|XP_587414.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861102|ref|XP_587414.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               267-386, - strand, RNAz p=0.681806

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-386, - strand, RNAz p=0.681806

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK074893, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK074893, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-386, gnl|bosTau2|chr29 (44801803-44802088)
               

               
               100-386, gnl|Hg17|chr11 (789279-789566)
               

               
               100-386, gnl|Mm7|chr7 (137855841-137856112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-386, gnl|bosTau2|chr29 (44801803-44802088)
               

               
               100-386, gnl|Hg17|chr11 (789279-789566)
               

               
               100-386, gnl|Mm7|chr7 (137855841-137856112)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	100-386, gnl\|bosTau2\|chr29 (44801803-44802088)
	100-386, gnl\|Hg17\|chr11 (789279-789566)
	100-386, gnl\|Mm7\|chr7 (137855841-137856112)