Non-Coding RNA Search

Ss1.1-rplac_4969.5

Sequence:


               
               AGAGAACATGCTGACCTAGTAATCATGAAGAATAAGAGGTACCTCAGCAATGGGCCAGAG
CAAGGTCTCTTATTATTTTCCTACGAACGTAATAAGGAAACGAATTTACTTTTTGGGTCC
AGAATGACTTTCTCCAAGGATCATAAGATGAAGATGATATATTTTGCCCAGGAACTAAAA
CGGCACGTTAAACATTCAATTACGAGAAGAATCACACTGAGTGAAATAAAAGACTGCCGT
GTGGGGGAAGAATTATTTTTCATGGTGCTACTAATCCTACTGTATCCCAGTTTTTTTTTA
ATATAAAAGTGTTAAGCTTATTTTGCTCTGTAAGTAAAGATTGTGTATATTGTATAAACA
GCCTTTTAGCTTAAAATGTCGAGTCATTTAGATGTGACCTGACATGAATCACTCTTTACA
GACAACTTAGGAAACCCTAGAATACAGACAGCAAGACTTTATATCCATGTTTATCAAAGT
GAGAGGATTTATATTCTTGCATCGAGTTCCTACCAAGAGTAAAATTATCTTGAGTTTTAG
CCCCTAATTTCCTATTCGACTTTGAAAAAATAGGTCATTTTTAGTCACTTTAATCAGAAT
TGTAAATGTACACGTCACATACCAAATTATAATAGCTAATGAAGCAGTTTCTCTTCTGCT
GTATTCGCCAAGAAACTCTGAACACCAGAGGCCCCCAGCTTTAATGGTTATTACATCTTG
TTTTTGCTCATTCCCGACTGGGCGAAGCTCTCCCAAATAATTTTGAGAAGCAAAAATATA
TTTTTTAAATTGGCCATTCTTTTCCCTGTGCTTTTTATGTAAGGCTTTTTCTCCTATAGT
CTCTGCCTGTACAAGAACTGGGGAGACAATACTTGATTAGTCTTCTCTCTTCAGTTACAA
AGCCACCTGATGGTCCTTTACCCTTCTTTATTTTCAACATGTTCTTATAAGTAGTCATAG
AATAAATGCCTTCTTTCCCTAGCTGTCATCTTCTCACGTCATGTTTTTTAACTCACCTGT
ATCAATTCAATTAAAGATATCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAACATGCTGACCTAGTAATCATGAAGAATAAGAGGTACCTCAGCAATGGGCCAGAG
CAAGGTCTCTTATTATTTTCCTACGAACGTAATAAGGAAACGAATTTACTTTTTGGGTCC
AGAATGACTTTCTCCAAGGATCATAAGATGAAGATGATATATTTTGCCCAGGAACTAAAA
CGGCACGTTAAACATTCAATTACGAGAAGAATCACACTGAGTGAAATAAAAGACTGCCGT
GTGGGGGAAGAATTATTTTTCATGGTGCTACTAATCCTACTGTATCCCAGTTTTTTTTTA
ATATAAAAGTGTTAAGCTTATTTTGCTCTGTAAGTAAAGATTGTGTATATTGTATAAACA
GCCTTTTAGCTTAAAATGTCGAGTCATTTAGATGTGACCTGACATGAATCACTCTTTACA
GACAACTTAGGAAACCCTAGAATACAGACAGCAAGACTTTATATCCATGTTTATCAAAGT
GAGAGGATTTATATTCTTGCATCGAGTTCCTACCAAGAGTAAAATTATCTTGAGTTTTAG
CCCCTAATTTCCTATTCGACTTTGAAAAAATAGGTCATTTTTAGTCACTTTAATCAGAAT
TGTAAATGTACACGTCACATACCAAATTATAATAGCTAATGAAGCAGTTTCTCTTCTGCT
GTATTCGCCAAGAAACTCTGAACACCAGAGGCCCCCAGCTTTAATGGTTATTACATCTTG
TTTTTGCTCATTCCCGACTGGGCGAAGCTCTCCCAAATAATTTTGAGAAGCAAAAATATA
TTTTTTAAATTGGCCATTCTTTTCCCTGTGCTTTTTATGTAAGGCTTTTTCTCCTATAGT
CTCTGCCTGTACAAGAACTGGGGAGACAATACTTGATTAGTCTTCTCTCTTCAGTTACAA
AGCCACCTGATGGTCCTTTACCCTTCTTTATTTTCAACATGTTCTTATAAGTAGTCATAG
AATAAATGCCTTCTTTCCCTAGCTGTCATCTTCTCACGTCATGTTTTTTAACTCACCTGT
ATCAATTCAATTAAAGATATCATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1044, gnl|bosTau2|chrX (18280110-18281119)
               

               
               1-1044, gnl|Hg17|chrX (107745880-107746910)
               

               
               1-1044, gnl|Mm7|chrX (136352594-136353495)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chrX (18280110-18281119)
               

               
               1-1044, gnl|Hg17|chrX (107745880-107746910)
               

               
               1-1044, gnl|Mm7|chrX (136352594-136353495)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               gul (0.355177)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1-1044, gnl\|bosTau2\|chrX (18280110-18281119)
	1-1044, gnl\|Hg17\|chrX (107745880-107746910)
	1-1044, gnl\|Mm7\|chrX (136352594-136353495)

	gul (0.355177)
	ova (0.258264)
	aor (0.195274)
	nlu (0.191681)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	pla (0.133672)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	jca (0.11396)
	eje (0.0988338)