Non-Coding RNA Search

Ss1.1-rplac_5841.5

Sequence:


               
               ACAAGACAAGCGAAAGAATTTTTTTTTTTTTTCCTTCTTAAATGAAATAGCAGGAACCTC
CTCGGGGGCTTGGGTTTTGAGTAACCCCAGGGGACGGATGCTACAAATGGATTAACTACC
TCAATCCTCACCGGGAAATTAAAACCAAGGGCTGGAACTACCGTCAGGGGATAAATCCCG
GCCAGGAGGAGTGACCTGAGGCTTGTCCCGCCAAAGGTTTGTCCTCAAAAACTAGGCACT
CATCGGTTGGATTGGGGGGGACTGGCCGTAAATCCCCCCCGCTCCTGCCTTGCTTGCCCT
GGGGTCCCAAGCTTCCCCTCTTCCCTTCAGATCGTCCCCCTCCCACCCGGTCACTCTCGC
GGGACCAGAGGGGTGAGGAGAGGACACGCCTCCTCCCTCCGCCCCCGAGGGGCGCCGCCT
GCAGGTGTGAGAGGTGGGCTTCGGCCTGGAACCCACGCGTCCGCCCCAAAGCCAGGAAGC
CCGAGCTGAGACCTCCTCAGCTGGGTTTCTTCGAGCTGCTCCACCTCCTCTGTACCCCTT
TCCCAGTCTTCACGGGGACAGTCGGCTCTAGGAGAAGAGGTGGAGCAGGATCCTTTGTCC
TGAGCGTCCGAGGGCCTGGTCCTCGGGGCTCAGGAGTCTTTGTAGTCGGGGAGTTTCCAC
TGGGCGGTCCCAGCCCCTCCCCACCCTCTAATGGACCTCCTCATAGAAGCCCCGTTTCAC
TTTTGTTTTATCTACCTCTTAGCAAGACAATAGAGAGAAATTAGGTAGTGGCAATTCCAC
TTGCTTAGATTAGGGGGGGAAAAAGATTTCTTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGACAAGCGAAAGAATTTTTTTTTTTTTTCCTTCTTAAATGAAATAGCAGGAACCTC
CTCGGGGGCTTGGGTTTTGAGTAACCCCAGGGGACGGATGCTACAAATGGATTAACTACC
TCAATCCTCACCGGGAAATTAAAACCAAGGGCTGGAACTACCGTCAGGGGATAAATCCCG
GCCAGGAGGAGTGACCTGAGGCTTGTCCCGCCAAAGGTTTGTCCTCAAAAACTAGGCACT
CATCGGTTGGATTGGGGGGGACTGGCCGTAAATCCCCCCCGCTCCTGCCTTGCTTGCCCT
GGGGTCCCAAGCTTCCCCTCTTCCCTTCAGATCGTCCCCCTCCCACCCGGTCACTCTCGC
GGGACCAGAGGGGTGAGGAGAGGACACGCCTCCTCCCTCCGCCCCCGAGGGGCGCCGCCT
GCAGGTGTGAGAGGTGGGCTTCGGCCTGGAACCCACGCGTCCGCCCCAAAGCCAGGAAGC
CCGAGCTGAGACCTCCTCAGCTGGGTTTCTTCGAGCTGCTCCACCTCCTCTGTACCCCTT
TCCCAGTCTTCACGGGGACAGTCGGCTCTAGGAGAAGAGGTGGAGCAGGATCCTTTGTCC
TGAGCGTCCGAGGGCCTGGTCCTCGGGGCTCAGGAGTCTTTGTAGTCGGGGAGTTTCCAC
TGGGCGGTCCCAGCCCCTCCCCACCCTCTAATGGACCTCCTCATAGAAGCCCCGTTTCAC
TTTTGTTTTATCTACCTCTTAGCAAGACAATAGAGAGAAATTAGGTAGTGGCAATTCCAC
TTGCTTAGATTAGGGGGGGAAAAAGATTTCTTTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               104-241, - strand, RNAz p=0.999604

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-241, - strand, RNAz p=0.999604

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               30-420, gnl|bosTau2|chr19 (30295443-30295039)
               

               
               30-420, gnl|canFam2|chr9 (28571552-28572345)
               

               
               30-420, gnl|dasNov1|scaffold_6663 (67177-68029)
               

               
               30-420, gnl|hg17|chr17 (44486322-44487144)
               

               
               30-420, gnl|Hg17|chr17 (44486636-44487026)
               

               
               30-420, gnl|mm7|chr11 (96068183-96067402)
               

               
               30-420, gnl|Mm7|chr11 (96067896-96067500)
               

               
               30-420, gnl|monDom2|scaffold_18 (45056340-45055399)
               

               
               30-420, gnl|oryCun1|scaffold_205042 (988-215)
               

               
               30-420, gnl|panTro1|chr19_random (43445458-43446280)
               

               
               30-420, gnl|rheMac2|chr16 (33288638-33289441)
               

               
               30-420, gnl|rn3|chr10 (84681241-84680493)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-420, gnl|bosTau2|chr19 (30295443-30295039)
               

               
               30-420, gnl|canFam2|chr9 (28571552-28572345)
               

               
               30-420, gnl|dasNov1|scaffold_6663 (67177-68029)
               

               
               30-420, gnl|hg17|chr17 (44486322-44487144)
               

               
               30-420, gnl|Hg17|chr17 (44486636-44487026)
               

               
               30-420, gnl|mm7|chr11 (96068183-96067402)
               

               
               30-420, gnl|Mm7|chr11 (96067896-96067500)
               

               
               30-420, gnl|monDom2|scaffold_18 (45056340-45055399)
               

               
               30-420, gnl|oryCun1|scaffold_205042 (988-215)
               

               
               30-420, gnl|panTro1|chr19_random (43445458-43446280)
               

               
               30-420, gnl|rheMac2|chr16 (33288638-33289441)
               

               
               30-420, gnl|rn3|chr10 (84681241-84680493)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               eje (0.0988338)

	30-420, gnl\|bosTau2\|chr19 (30295443-30295039)
	30-420, gnl\|canFam2\|chr9 (28571552-28572345)
	30-420, gnl\|dasNov1\|scaffold_6663 (67177-68029)
	30-420, gnl\|hg17\|chr17 (44486322-44487144)
	30-420, gnl\|Hg17\|chr17 (44486636-44487026)
	30-420, gnl\|mm7\|chr11 (96068183-96067402)
	30-420, gnl\|Mm7\|chr11 (96067896-96067500)
	30-420, gnl\|monDom2\|scaffold_18 (45056340-45055399)
	30-420, gnl\|oryCun1\|scaffold_205042 (988-215)
	30-420, gnl\|panTro1\|chr19_random (43445458-43446280)
	30-420, gnl\|rheMac2\|chr16 (33288638-33289441)
	30-420, gnl\|rn3\|chr10 (84681241-84680493)