Non-Coding RNA Search

Ss1.1-rplac_5891.5

Sequence:


               
               CTATGGTTCCCCTTCCCTTCTCCTCCAATAAACACCTAGAAGAGGGAACCTAAGTACCCA
AGTGAAACAAAGGAGATGGGCAGCCGGCTTTTCCCTTTCTCATGGTGGGACTGAATTTTG
GGCTCAGACACCAGCAACAGCCTCTTGGGATGCCCCAAGTTGCTTCCCTTTTCCTCTGTC
CTTTTTTAGGTGTGCTCTTTCTTCCTTGGAACTTTTTAAGATTTCCTGTTACATACCAAC
ATGGGTCTTCCCCCTCACTCCAATTCTAGGTTTCTAGGCCTCATAGTCAAGCTGAGGCTT
GGAGAAAACTCTGTAATTTCATGAGAGCAAAGGCAGCTGCCCTCCCTGACCCTATAACCC
TAAGCCTCACGTGGGGTGTATGGGTCAGGGAGCAGGTAACCCCGTGGATGCTGGGATGGG
GACAGAGGAAGCCCTACTGGGGGGTCTCCTATCCAAGGGAGTAAGCCAAATTTATATTAA
GAGCAGATCAAAGTCCCCATGCCCATCCACCAGGGCCTAGTAGTTGACAGCCTTGCTCCT
CTTCCTAGGTTCTTCTTCAGTTACAACCTAGTTTCTTTTATTCTTCCAGCTACTCCATGG
TTGCTTCACAGCCAGCTTAGGGTCTTCAGCACTTCAAAGAGATGAAACTCCAACTCTTAC
CGCCTACTCCTTTGCTGTCAGCGGGAGCCTAGGCTTAGCTCTGGGAAGTGCTCATGATCC
TTCTGTGGGGGAAGTGTGAGTTATAGAGCACTTGGCTCAAATTTCAAAAGGCTTCTCTCT
ACCTTACCCCATATTTATGGAGGCTCCTGTAGTTCTAGAACTCTCCAATATCATCATTTG
GCTAGTTGCAAGGCTCATGTCTTTGTATTTTCCTATAGATTCTGTAGCACTTGAGTGTGG
CAATATTTTAACTGTGTATATTTCTAAGAACAACACTACTTGGTCTCCTGCTAGTCTGAC
TCCTGAAGCATCAGAACTTGTCATACTATATTGACTGTGTATGTGCCTTTCACCTTGAGC
ATGCTTCAGGATTTTTTTTTTTTAAACCACAGAACTTGAATCCATGAAGGAACCAGAATT
CACAAAGTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGGTTCCCCTTCCCTTCTCCTCCAATAAACACCTAGAAGAGGGAACCTAAGTACCCA
AGTGAAACAAAGGAGATGGGCAGCCGGCTTTTCCCTTTCTCATGGTGGGACTGAATTTTG
GGCTCAGACACCAGCAACAGCCTCTTGGGATGCCCCAAGTTGCTTCCCTTTTCCTCTGTC
CTTTTTTAGGTGTGCTCTTTCTTCCTTGGAACTTTTTAAGATTTCCTGTTACATACCAAC
ATGGGTCTTCCCCCTCACTCCAATTCTAGGTTTCTAGGCCTCATAGTCAAGCTGAGGCTT
GGAGAAAACTCTGTAATTTCATGAGAGCAAAGGCAGCTGCCCTCCCTGACCCTATAACCC
TAAGCCTCACGTGGGGTGTATGGGTCAGGGAGCAGGTAACCCCGTGGATGCTGGGATGGG
GACAGAGGAAGCCCTACTGGGGGGTCTCCTATCCAAGGGAGTAAGCCAAATTTATATTAA
GAGCAGATCAAAGTCCCCATGCCCATCCACCAGGGCCTAGTAGTTGACAGCCTTGCTCCT
CTTCCTAGGTTCTTCTTCAGTTACAACCTAGTTTCTTTTATTCTTCCAGCTACTCCATGG
TTGCTTCACAGCCAGCTTAGGGTCTTCAGCACTTCAAAGAGATGAAACTCCAACTCTTAC
CGCCTACTCCTTTGCTGTCAGCGGGAGCCTAGGCTTAGCTCTGGGAAGTGCTCATGATCC
TTCTGTGGGGGAAGTGTGAGTTATAGAGCACTTGGCTCAAATTTCAAAAGGCTTCTCTCT
ACCTTACCCCATATTTATGGAGGCTCCTGTAGTTCTAGAACTCTCCAATATCATCATTTG
GCTAGTTGCAAGGCTCATGTCTTTGTATTTTCCTATAGATTCTGTAGCACTTGAGTGTGG
CAATATTTTAACTGTGTATATTTCTAAGAACAACACTACTTGGTCTCCTGCTAGTCTGAC
TCCTGAAGCATCAGAACTTGTCATACTATATTGACTGTGTATGTGCCTTTCACCTTGAGC
ATGCTTCAGGATTTTTTTTTTTTAAACCACAGAACTTGAATCCATGAAGGAACCAGAATT
CACAAAGTCTAT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               1-116, - strand, RNAz p=0.938962
               

               
               227-465, - strand, RNAz p=0.998685
               

               
               581-696, - strand, RNAz p=0.969996
               

               
               924-1039, - strand, RNAz p=0.964327

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.938962
               

               
               227-465, - strand, RNAz p=0.998685
               

               
               581-696, - strand, RNAz p=0.969996
               

               
               924-1039, - strand, RNAz p=0.964327

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1089, gnl|bosTau2|chr13 (46837392-46836304)
               

               
               1-1089, gnl|Hg17|chr20 (32763087-32764173)
               

               
               1-1089, gnl|Mm7|chr2 (155128976-155130000)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1089, gnl|bosTau2|chr13 (46837392-46836304)
               

               
               1-1089, gnl|Hg17|chr20 (32763087-32764173)
               

               
               1-1089, gnl|Mm7|chr2 (155128976-155130000)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pla (0.534688)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               hyp (0.142837)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               hyp (0.142837)

	1-116, - strand, RNAz p=0.938962
	227-465, - strand, RNAz p=0.998685
	581-696, - strand, RNAz p=0.969996
	924-1039, - strand, RNAz p=0.964327

	1-1089, gnl\|bosTau2\|chr13 (46837392-46836304)
	1-1089, gnl\|Hg17\|chr20 (32763087-32764173)
	1-1089, gnl\|Mm7\|chr2 (155128976-155130000)

	pla (0.534688)
	ece (0.229305)
	eje (0.197668)
	nep (0.183925)
	hyp (0.142837)