Ss1.1-rplac_5905.5
|
CCTTCACTCTCTTTGTGGGGGGCCTCCCTGCCAGCGGCCGCAGCCCCAAGCTCCCAGCCG
CCGGCAGCTCAGGGTTCAACGGTTGTGTGAAGAGACTCAGGTTGGATGGGCAGCTCCTGG
GGGCCCCCACGCGGATGGTGGGGGTCACGCCCTGCTTCTCGGGCCCTCTGCAGAAGGGCC
TCTTCTTCGCAGGCAGCGGGGGCGTCATCACTCTAGACACTCTGGGGGCCACACTGCCTG
ACGTGGGCCTGGAGCTGGAGGTGCGGCCCCAGACAGCCACTGGCCTCGTCTTCCACCTGG
GCCGGGGCCAGGTGCCCCCCTACCTGCAGCTGCAGGTGTCGAAGAAGCAGGTCCTGCTGC
AGGCGGACGACGGTGCAGGCGAGTTCTCTGTGCTGGTGACGCGCCCCAAGGCACTGTGTG
ACGGGCGGTGGCACCGACTGGCAGTGACCAAAGGCGGGAGCCTGCTCCGGCTGGAGGTGG
ACCTGCAGAGCAACCACACCCTGGGCCCCGTGCCAGCAGCCTCGGCCAACACCCTGGTGC
CTCTGCATCTGGGCGGCCTGCCTGAACCCACGGATGCACAGGCCCGGCCCCCAGCCTACG
GCGGCTGCATGCGCAACCTGCGGGTGAACCAGGCCCCGGTCGCCCTGCCTCCCACTGCGG
GCGTGCAGGGGGCAGTGGGGGCTGGTGGCTGTCCAGCCACGTAGCACAGCTGCCCCTCTG
GGTCCCCAGCCCCAGCCACCACGCGGGGTGGGGGTCTTTAGGACACCCAGAATTGCGGGG
TTCTGCCCCTGGGGTCCCAGCCCCTCTACACACCCTGCCGACAGCACCCCCTCAGCCTGT
TCTCTTAGACGAAATGTGTCTCTCGGCCCCGGGTTCCACGGGTGGGGGGGTCTTATTTCG
GGAGGTGGCTTGAGTTCTGTCTGACTTTCTCAATGAAAGGGTCAAATACTGTGAGTGGGA
TTTTTGCCTTCGTCATCCTGCGTTTCCCTGCTGTGGGCTGGAACCGTGCCGGGGGTCTGC
CAGTCACTGGCCCCCGCGTCTTAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTTCACTCTCTTTGTGGGGGGCCTCCCTGCCAGCGGCCGCAGCCCCAAGCTCCCAGCCG
CCGGCAGCTCAGGGTTCAACGGTTGTGTGAAGAGACTCAGGTTGGATGGGCAGCTCCTGG
GGGCCCCCACGCGGATGGTGGGGGTCACGCCCTGCTTCTCGGGCCCTCTGCAGAAGGGCC
TCTTCTTCGCAGGCAGCGGGGGCGTCATCACTCTAGACACTCTGGGGGCCACACTGCCTG
ACGTGGGCCTGGAGCTGGAGGTGCGGCCCCAGACAGCCACTGGCCTCGTCTTCCACCTGG
GCCGGGGCCAGGTGCCCCCCTACCTGCAGCTGCAGGTGTCGAAGAAGCAGGTCCTGCTGC
AGGCGGACGACGGTGCAGGCGAGTTCTCTGTGCTGGTGACGCGCCCCAAGGCACTGTGTG
ACGGGCGGTGGCACCGACTGGCAGTGACCAAAGGCGGGAGCCTGCTCCGGCTGGAGGTGG
ACCTGCAGAGCAACCACACCCTGGGCCCCGTGCCAGCAGCCTCGGCCAACACCCTGGTGC
CTCTGCATCTGGGCGGCCTGCCTGAACCCACGGATGCACAGGCCCGGCCCCCAGCCTACG
GCGGCTGCATGCGCAACCTGCGGGTGAACCAGGCCCCGGTCGCCCTGCCTCCCACTGCGG
GCGTGCAGGGGGCAGTGGGGGCTGGTGGCTGTCCAGCCACGTAGCACAGCTGCCCCTCTG
GGTCCCCAGCCCCAGCCACCACGCGGGGTGGGGGTCTTTAGGACACCCAGAATTGCGGGG
TTCTGCCCCTGGGGTCCCAGCCCCTCTACACACCCTGCCGACAGCACCCCCTCAGCCTGT
TCTCTTAGACGAAATGTGTCTCTCGGCCCCGGGTTCCACGGGTGGGGGGGTCTTATTTCG
GGAGGTGGCTTGAGTTCTGTCTGACTTTCTCAATGAAAGGGTCAAATACTGTGAGTGGGA
TTTTTGCCTTCGTCATCCTGCGTTTCCCTGCTGTGGGCTGGAACCGTGCCGGGGGTCTGC
CAGTCACTGGCCCCCGCGTCTTAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
57-216, gnl|bosTau2|chr13 (36064410-36064569) |
|
57-216, gnl|canFam2|chr24 (49362649-49362809) |
|
57-216, gnl|danRer3|chr23 (5729958-5730120) |
|
57-216, gnl|dasNov1|scaffold_139767 (194-38) |
|
57-216, gnl|galGal2|chr20 (7561947-7562115) |
|
57-216, gnl|hg17|chr20 (60318861-60319018) |
|
57-216, gnl|Hg17|chr20 (60319020-60318870) |
|
57-216, gnl|mm7|chr2 (180678396-180678552) |
|
57-216, gnl|Mm7|chr2 (180678554-180678404) |
|
57-216, gnl|monDom2|scaffold_1 (179852187-179852350) |
|
57-216, gnl|oryCun1|scaffold_54877 (508-351) |
|
57-216, gnl|rheMac2|chr10 (2230772-2230615) |
|
57-216, gnl|rn3|chr3 (169141036-169141192) |
|
57-216, gnl|xenTro1|scaffold_6288 (8919-8780) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
57-216, gnl|bosTau2|chr13 (36064410-36064569) |
|
57-216, gnl|canFam2|chr24 (49362649-49362809) |
|
57-216, gnl|danRer3|chr23 (5729958-5730120) |
|
57-216, gnl|dasNov1|scaffold_139767 (194-38) |
|
57-216, gnl|galGal2|chr20 (7561947-7562115) |
|
57-216, gnl|hg17|chr20 (60318861-60319018) |
|
57-216, gnl|Hg17|chr20 (60319020-60318870) |
|
57-216, gnl|mm7|chr2 (180678396-180678552) |
|
57-216, gnl|Mm7|chr2 (180678554-180678404) |
|
57-216, gnl|monDom2|scaffold_1 (179852187-179852350) |
|
57-216, gnl|oryCun1|scaffold_54877 (508-351) |
|
57-216, gnl|rheMac2|chr10 (2230772-2230615) |
|
57-216, gnl|rn3|chr3 (169141036-169141192) |
|
57-216, gnl|xenTro1|scaffold_6288 (8919-8780) |
|
pla (0.935704) |
|
nms (0.213858) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
nco (0.161734) |
|
nca (0.136874) |
|
ute (0.132784) |
|
ese (0.126502) |
|
pla (0.935704) |
|
nms (0.213858) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
nco (0.161734) |
|
nca (0.136874) |
|
ute (0.132784) |
|
ese (0.126502) |
