Non-Coding RNA Search

Ss1.1-rplac_5927.5

Sequence:


               
               AAAAACCTCTCTCCCTGACATATTTCCACTTCCTATGGAGTCCGTGAAGGAGAAATCAAT
GGCTGTGTCCTCCTTTAGGGAGGTAGTGAGTGGAAATCTTTGAGTCTGGAAGAATTGTGG
TGGATTTCCCAGCTACTATGGAGCTTTGATACCAGTTGTGTGTTTTTGTTTTTCACCGTA
ACTGCTTTGCCCCAAGTTCATCTCTCAGTTCAATTCTTCCTCTTGGTACTGGTTCAGGTA
GCATTTTCTTGCAGGTAACTAATCAAGAGTGGAATTTGAAGTTACAATCCAGTCAAGTGT
TTGAGGTTCTTTAGGATAGGATCAACTAAACTGAACTTGACACTTTTTTTTTTTAACATT
ATTTGTGTGTGGTGTGTTTTGCTTTTGGTTTTTAATCCATGAACATTCAAGTAACAAGTG
GATTTTAAAGTGCTAGGTGGGGAAAGGGAATAGTGCTTTCCTTTAAAAAAATAAATAAAT
AAAAAGTTTAGGAGATGCTTTATGAGTATTAAAAAGGCAAGAGCAGAATTAAATTTTCCC
AGGAGCAACAGGGAAAGCTTTATAAACGATTGTGTGGCCATTCTGGCTTAAGCTATGAAG
AAAGGAAGTTTTGATTTGATCGGTTCTTTCTGTGCCTGCGTTACCAGTAGCTACACTGAG
AAGAAGCTATCACCTTAGGAGTTTGGAAAGGAAGGAACCTGGCCTGTGGTTTTTATGGCA
TTCAGACAAAACAAGTACTAAACGTCTCCTGTCCAGGGATAGCTCCTGAGGTTAGAGAGT
TGTCCTTTTCTCTGCGTGGAGCTGGGTTTATTTGAAAAGGAAGTTAGTTTATTTGAATAA
TGGGACATCAAACTACCTAAGCCAAATTTCAGTATAGAACCCATTTTCTCTTTTTTTCCC
TCGATAAGCTAGATACAGAAGACTCCAAACCCCAGGTCCCTAAGTTACACTTCTTTTCAA
AGCCTAATTCACAGAATTCACAGTGGTGCTGACTGTGTATTAACCACTATTTGGAAAAAT
CCTGTAAACCTGCCTGTTGCCATGCCAATGGAGTGACTGAACTGGTGACATCGGAGCATG
CTTTGTGTGGCTGGTGGTAATGCCACCATTGTGCATATACTTTGTACATCAGGGGTGAAG
GGAGGGTTTTCTAGATTATGGGGGGAGGGTAAAATTGGGACTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAACCTCTCTCCCTGACATATTTCCACTTCCTATGGAGTCCGTGAAGGAGAAATCAAT
GGCTGTGTCCTCCTTTAGGGAGGTAGTGAGTGGAAATCTTTGAGTCTGGAAGAATTGTGG
TGGATTTCCCAGCTACTATGGAGCTTTGATACCAGTTGTGTGTTTTTGTTTTTCACCGTA
ACTGCTTTGCCCCAAGTTCATCTCTCAGTTCAATTCTTCCTCTTGGTACTGGTTCAGGTA
GCATTTTCTTGCAGGTAACTAATCAAGAGTGGAATTTGAAGTTACAATCCAGTCAAGTGT
TTGAGGTTCTTTAGGATAGGATCAACTAAACTGAACTTGACACTTTTTTTTTTTAACATT
ATTTGTGTGTGGTGTGTTTTGCTTTTGGTTTTTAATCCATGAACATTCAAGTAACAAGTG
GATTTTAAAGTGCTAGGTGGGGAAAGGGAATAGTGCTTTCCTTTAAAAAAATAAATAAAT
AAAAAGTTTAGGAGATGCTTTATGAGTATTAAAAAGGCAAGAGCAGAATTAAATTTTCCC
AGGAGCAACAGGGAAAGCTTTATAAACGATTGTGTGGCCATTCTGGCTTAAGCTATGAAG
AAAGGAAGTTTTGATTTGATCGGTTCTTTCTGTGCCTGCGTTACCAGTAGCTACACTGAG
AAGAAGCTATCACCTTAGGAGTTTGGAAAGGAAGGAACCTGGCCTGTGGTTTTTATGGCA
TTCAGACAAAACAAGTACTAAACGTCTCCTGTCCAGGGATAGCTCCTGAGGTTAGAGAGT
TGTCCTTTTCTCTGCGTGGAGCTGGGTTTATTTGAAAAGGAAGTTAGTTTATTTGAATAA
TGGGACATCAAACTACCTAAGCCAAATTTCAGTATAGAACCCATTTTCTCTTTTTTTCCC
TCGATAAGCTAGATACAGAAGACTCCAAACCCCAGGTCCCTAAGTTACACTTCTTTTCAA
AGCCTAATTCACAGAATTCACAGTGGTGCTGACTGTGTATTAACCACTATTTGGAAAAAT
CCTGTAAACCTGCCTGTTGCCATGCCAATGGAGTGACTGAACTGGTGACATCGGAGCATG
CTTTGTGTGGCTGGTGGTAATGCCACCATTGTGCATATACTTTGTACATCAGGGGTGAAG
GGAGGGTTTTCTAGATTATGGGGGGAGGGTAAAATTGGGACTTTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|11493465|gb|AAG35506.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11493465|gb|AAG35506.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-347, gnl|bosTau2|chr16 (2977468-2977130)
               

               
               2-347, gnl|Hg17|chr1 (202416216-202415880)
               

               
               2-347, gnl|Mm7|chr1 (131829528-131829848)
               


               
               489-1188, gnl|bosTau2|chr16 (2977035-2976336)
               

               
               489-1188, gnl|Hg17|chr1 (202415790-202415057)
               

               
               489-1188, gnl|Mm7|chr1 (131829971-131830747)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-347, gnl|bosTau2|chr16 (2977468-2977130)
               

               
               2-347, gnl|Hg17|chr1 (202416216-202415880)
               

               
               2-347, gnl|Mm7|chr1 (131829528-131829848)
               


               
               489-1188, gnl|bosTau2|chr16 (2977035-2976336)
               

               
               489-1188, gnl|Hg17|chr1 (202415790-202415057)
               

               
               489-1188, gnl|Mm7|chr1 (131829971-131830747)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cty (0.5204)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.5204)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	2-347, gnl\|bosTau2\|chr16 (2977468-2977130)
	2-347, gnl\|Hg17\|chr1 (202416216-202415880)
	2-347, gnl\|Mm7\|chr1 (131829528-131829848)

	489-1188, gnl\|bosTau2\|chr16 (2977035-2976336)
	489-1188, gnl\|Hg17\|chr1 (202415790-202415057)
	489-1188, gnl\|Mm7\|chr1 (131829971-131830747)

	cty (0.5204)
	jca (0.22792)
	nms (0.213858)
	pla (0.133672)
	bla (0.124347)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)