Non-Coding RNA Search

Ss1.1-rplac_5929.5

Sequence:


               
               CCACATGGAAGACGTCGCTGCACATGTGTGACGGGCGCACGCCCACCCCTGAGGAGCTGC
CACCCTGCTACGAGGGCACGGACTGGTCGGGCTGCACACTGCAGGAGTTCATGGACTGCC
CCTACAACCTGGCCAATAACCGCCAGGTGCGAATGCTGGCCGACCTGAGCCTGGTGGGCT
GCTACAACCTGTCCTTCATCCCCGAGGGCAAGCGGTCCCAACTGCTGCTGGAAAGCGCCA
AGAAGAACCTGCGGGGCATGGCCTTCTTCGGCCTGACCGAGTTCCAGCGCAAGACGCAGT
ACCTGTTCGAGCGGACGTTCAACCTCAAGTTCATCCGGCCTTTCATGCAGTACAACAGCA
CGCGAGCGGGTGGCGTGGAGGTGGGTGAGGACACCATCCGGCGCATTGAGGAGCTCAACG
ACCTGGACATGCAGCTGTACGACTACGCCAGGGACCTCTTCCAGCAGCGCTATCAGTACA
AGCGGCAGCTGGAGCGCCGGCAGCAGCGCCTCCGGAGCCGCGAGGAGCGCCTGCTGCACC
GGGCCAAGGAGGCGCCACCTCGGGGGGACACCGAGGAGCCGGGCCGAGTGCCCACTGAGG
ACTACATGAGCCACATCATCGAGAAGTGGTAGTGGTGGCCGGCGGGGGGAGGTGGGACCA
CACAGACCAACACATGGTCCCAGGACTCTGGGAAGAGCCCCCATCCGCTCCCCAGAAGGC
AGATGCGCCCTGAGCCTTCAAGGGGACAGGAAGGGGTGGGCTGGGTGGGCTGAGCGGGTT
GGCTCTTGCTGCCCTCCCAGGCTGGGGTCTGAGAAATCAACCTGGGGACCTACTGGGTTA
GAGGAAAGCATGCATAAAGGACGCCGCACCAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACATGGAAGACGTCGCTGCACATGTGTGACGGGCGCACGCCCACCCCTGAGGAGCTGC
CACCCTGCTACGAGGGCACGGACTGGTCGGGCTGCACACTGCAGGAGTTCATGGACTGCC
CCTACAACCTGGCCAATAACCGCCAGGTGCGAATGCTGGCCGACCTGAGCCTGGTGGGCT
GCTACAACCTGTCCTTCATCCCCGAGGGCAAGCGGTCCCAACTGCTGCTGGAAAGCGCCA
AGAAGAACCTGCGGGGCATGGCCTTCTTCGGCCTGACCGAGTTCCAGCGCAAGACGCAGT
ACCTGTTCGAGCGGACGTTCAACCTCAAGTTCATCCGGCCTTTCATGCAGTACAACAGCA
CGCGAGCGGGTGGCGTGGAGGTGGGTGAGGACACCATCCGGCGCATTGAGGAGCTCAACG
ACCTGGACATGCAGCTGTACGACTACGCCAGGGACCTCTTCCAGCAGCGCTATCAGTACA
AGCGGCAGCTGGAGCGCCGGCAGCAGCGCCTCCGGAGCCGCGAGGAGCGCCTGCTGCACC
GGGCCAAGGAGGCGCCACCTCGGGGGGACACCGAGGAGCCGGGCCGAGTGCCCACTGAGG
ACTACATGAGCCACATCATCGAGAAGTGGTAGTGGTGGCCGGCGGGGGGAGGTGGGACCA
CACAGACCAACACATGGTCCCAGGACTCTGGGAAGAGCCCCCATCCGCTCCCCAGAAGGC
AGATGCGCCCTGAGCCTTCAAGGGGACAGGAAGGGGTGGGCTGGGTGGGCTGAGCGGGTT
GGCTCTTGCTGCCCTCCCAGGCTGGGGTCTGAGAAATCAACCTGGGGACCTACTGGGTTA
GAGGAAAGCATGCATAAAGGACGCCGCACCAAGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BVI1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BVI1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, + strand, RNAz p=0.705793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, + strand, RNAz p=0.705793

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-613, gnl|bosTau2|chr12 (38151233-38150618)
               

               
               1-613, gnl|Hg17|chr13 (96282822-96283437)
               

               
               1-613, gnl|Mm7|chr14 (114278199-114278814)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr12 (38151233-38150618)
               

               
               1-613, gnl|Hg17|chr13 (96282822-96283437)
               

               
               1-613, gnl|Mm7|chr14 (114278199-114278814)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	1-613, gnl\|bosTau2\|chr12 (38151233-38150618)
	1-613, gnl\|Hg17\|chr13 (96282822-96283437)
	1-613, gnl\|Mm7\|chr14 (114278199-114278814)