Ss1.1-rplac_6021.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTGGCCGCTCCAGCCGTCCCGGACGCTGCCAAGACAACTGGCCCCCCAGCCTGTGGG AAGCCCCAGCAGCTGAACCGCATCGTGGGCGGCGAGGACAGCATGGATGCTGAGTGGCCC TGGGTCGTGAGCATCCAGAAGAACGGCACCCACCACTGCGCAGGCTCTTTGCTCACCAGC CACTGGGTGGTCACAGCTGCCCACTGCTTCAAAGGCAGTCTGAACAAACTAGCCCAGTTC TCTGTGCTGCTTGGGGCCTGGCAACTGGGGAACCCAGGCCCGAGGTCTCAGGAGGTGGGT ATTGCCCGGGTGCAGCCCCACCCCGTGTACTCCTGGAAGGAGGGCTCCCGTGCCGACATC GCCTTGGTGCACCTGGAGCGCTCCATCCAGTTCTCGGAACGTGTCCTGCCCATCTGCCTG CCCGATTCCTCCGTCCGGCTCCCTCCGGGCACTGACTGCTGGATTGCCGGCTGGGGGAGC ATCCATGATGGAGTGCCCCTGCCCCGACCCCAGACCCTCCAGAAGCTGAAGGTTCCCATC ATTGACTCCGGAATCTGCAGCCGCCTGTACTGGCGGGGCACCGGGGAGGGGGCCGTCACG GAGGACATGCTGTGTGCCGGCTACCTGGAGGGGCAGCGCGATGCCTGCCTGGGCGACTCC GGGGGCCCCATGATGTGCCAAGTCGAGGGCACCTGGCTGCTGGCCGGCGTCATCAGCTGG GGCGAGGGCTGTGCGGAGCGCAACCGGCCTGGCGTCTACATCAGCCTGGCCGCCCACCGC TCATGGGTGCAGAGGATCGTGCAAGGGGTGCAGCTCGGCGGGCACGCGCAGGGCAGTAGG CCCGCAGGGCGCCGGGGACGAGCTTCCGGGGTGCGGCGCGCTCCCGGGGCGGGCAGGGAC CATCGGGGTCAGGGAGCTGCCAGGAGACCGCGCGGCGCTTCCTCCTTGTGAAAAAGCCGA CTACCTCTGGGGGGCGCCCGCGTGCCGGCGCCGGATCGCCTCGCGGGGAGGCCCCGCCCC AGGCCGGGCCGGGAGGCCTGTGTGTGTATATACCTGTTAATGATTTTTACAGTTACTTGT AACCCCGCCCACATGTCTTATTTATTCCTCCGATTTCAATAAATTATTTATTTCCCAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTGGCCGCTCCAGCCGTCCCGGACGCTGCCAAGACAACTGGCCCCCCAGCCTGTGGG AAGCCCCAGCAGCTGAACCGCATCGTGGGCGGCGAGGACAGCATGGATGCTGAGTGGCCC TGGGTCGTGAGCATCCAGAAGAACGGCACCCACCACTGCGCAGGCTCTTTGCTCACCAGC CACTGGGTGGTCACAGCTGCCCACTGCTTCAAAGGCAGTCTGAACAAACTAGCCCAGTTC TCTGTGCTGCTTGGGGCCTGGCAACTGGGGAACCCAGGCCCGAGGTCTCAGGAGGTGGGT ATTGCCCGGGTGCAGCCCCACCCCGTGTACTCCTGGAAGGAGGGCTCCCGTGCCGACATC GCCTTGGTGCACCTGGAGCGCTCCATCCAGTTCTCGGAACGTGTCCTGCCCATCTGCCTG CCCGATTCCTCCGTCCGGCTCCCTCCGGGCACTGACTGCTGGATTGCCGGCTGGGGGAGC ATCCATGATGGAGTGCCCCTGCCCCGACCCCAGACCCTCCAGAAGCTGAAGGTTCCCATC ATTGACTCCGGAATCTGCAGCCGCCTGTACTGGCGGGGCACCGGGGAGGGGGCCGTCACG GAGGACATGCTGTGTGCCGGCTACCTGGAGGGGCAGCGCGATGCCTGCCTGGGCGACTCC GGGGGCCCCATGATGTGCCAAGTCGAGGGCACCTGGCTGCTGGCCGGCGTCATCAGCTGG GGCGAGGGCTGTGCGGAGCGCAACCGGCCTGGCGTCTACATCAGCCTGGCCGCCCACCGC TCATGGGTGCAGAGGATCGTGCAAGGGGTGCAGCTCGGCGGGCACGCGCAGGGCAGTAGG CCCGCAGGGCGCCGGGGACGAGCTTCCGGGGTGCGGCGCGCTCCCGGGGCGGGCAGGGAC CATCGGGGTCAGGGAGCTGCCAGGAGACCGCGCGGCGCTTCCTCCTTGTGAAAAAGCCGA CTACCTCTGGGGGGCGCCCGCGTGCCGGCGCCGGATCGCCTCGCGGGGAGGCCCCGCCCC AGGCCGGGCCGGGAGGCCTGTGTGTGTATATACCTGTTAATGATTTTTACAGTTACTTGT AACCCCGCCCACATGTCTTATTTATTCCTCCGATTTCAATAAATTATTTATTTCCCAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 43-212, gnl|bosTau2|chr25 (131097-130928) | |
| 43-212, gnl|canFam2|chr6 (41415710-41415852) | |
| 43-212, gnl|dasNov1|scaffold_26550 (1878-1735) | |
| 43-212, gnl|echTel1|scaffold_240983 (3327-3197) | |
| 43-212, gnl|fr1|chrUn (161450093-161449955) | |
| 43-212, gnl|hg17|chr16 (2846079-2846221) | |
| 43-212, gnl|Hg17|chr16 (2846256-2846087) | |
| 43-212, gnl|loxAfr1|scaffold_15721 (30889-31020) | |
| 43-212, gnl|mm7|chr17 (22177168-22177310) | |
| 43-212, gnl|Mm7|chr17 (22177345-22177176) | |
| 43-212, gnl|monDom2|scaffold_49 (7405645-7405787) | |
| 43-212, gnl|oryCun1|scaffold_143770 (808-666) | |
| 43-212, gnl|panTro1|chr18 (2730784-2730926) | |
| 43-212, gnl|rheMac2|chr19 (2211287-2211147) | |
| 43-212, gnl|rn3|chr10 (13250898-13251040) | |
| 43-212, gnl|tetNig1|chr6 (2658596-2658464) | |
| 219-493, gnl|bosTau2|chr25 (130474-130200) | |
| 219-493, gnl|Hg17|chr16 (2845850-2845576) | |
| 219-493, gnl|Mm7|chr17 (22177023-22176749) | |
| 651-1136, gnl|bosTau2|chr25 (128105-127602) | |
| 651-1136, gnl|Hg17|chr16 (2843332-2842747) | |
| 651-1136, gnl|Mm7|chr17 (22173920-22173409) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-212, gnl|bosTau2|chr25 (131097-130928) | |
| 43-212, gnl|canFam2|chr6 (41415710-41415852) | |
| 43-212, gnl|dasNov1|scaffold_26550 (1878-1735) | |
| 43-212, gnl|echTel1|scaffold_240983 (3327-3197) | |
| 43-212, gnl|fr1|chrUn (161450093-161449955) | |
| 43-212, gnl|hg17|chr16 (2846079-2846221) | |
| 43-212, gnl|Hg17|chr16 (2846256-2846087) | |
| 43-212, gnl|loxAfr1|scaffold_15721 (30889-31020) | |
| 43-212, gnl|mm7|chr17 (22177168-22177310) | |
| 43-212, gnl|Mm7|chr17 (22177345-22177176) | |
| 43-212, gnl|monDom2|scaffold_49 (7405645-7405787) | |
| 43-212, gnl|oryCun1|scaffold_143770 (808-666) | |
| 43-212, gnl|panTro1|chr18 (2730784-2730926) | |
| 43-212, gnl|rheMac2|chr19 (2211287-2211147) | |
| 43-212, gnl|rn3|chr10 (13250898-13251040) | |
| 43-212, gnl|tetNig1|chr6 (2658596-2658464) | |
| 219-493, gnl|bosTau2|chr25 (130474-130200) | |
| 219-493, gnl|Hg17|chr16 (2845850-2845576) | |
| 219-493, gnl|Mm7|chr17 (22177023-22176749) | |
| 651-1136, gnl|bosTau2|chr25 (128105-127602) | |
| 651-1136, gnl|Hg17|chr16 (2843332-2842747) | |
| 651-1136, gnl|Mm7|chr17 (22173920-22173409) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| pla (0.534688) | |
| fcc (0.39557) | |
| ece (0.229305) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| eru (0.120048) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| fcc (0.39557) | |
| ece (0.229305) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| eru (0.120048) |