Ss1.1-rplac_6110.5
|
GCTGCGAGGCATGAGGTACCACCCAATAGACGTGGAGACCTCGGTCATCAGAGCACACAA
GAGCGTCACGGAGTGCGCCGTGTTCACCTGGACCAACCTGCTGGTGGTGGTGGTGGAGCT
GGACGGGTCCGAGCAGGAAGCCCTGGACCTGGTGCCCCTGGTCACCAACGTGGTGCTGGG
GGAGCACTACCTGGTGGTGGGCGTGGTGGTGGTGGTGGACATCGGCGTCATCCCCATCAA
CTCCCGGGGCGAGAAGCATCGCATGCACCTGCGCGACGGCTTCCTGGCCGACCAGCTGGA
CCCCATCTACGTGGCCTACAACATGTAGGCCCGCGGGCGGCTCGGGCGGCCCAAAGATGC
GACGTGTGCTCAGAAGGACTTTGCGTGCCTGCCTTCAGTTTGTCGGAAAAGCCCATTTCG
AAAACTTCCTTTTCTTTCTTTTTTTTGAATTATTGGATAATAAGTGCTTTCTTCGTACAT
GTGGTATTTTGTTAAGCCAAAATAGCGATTAAAAGAAGTATCTGCCCTCCAGGTGGGTTC
TTTTAAGCAGTTTATGTAGTGTGACAAAGAATTGTTTTCTCTGTTTTAATGTGTCATGAA
GTCCTAATGACATGGACCTGCTACTGATTTAAGCCATTGCTAGATCTCATCCTTTTAGGG
ACGTTTGCTGAGGTACGAGAAAACCTTCCAGTTAGATTTTAGCAGCTTTCTCTGTCAGAG
TGTGCTGAAGAAACAGGCTCATACACGGCCTTTGAAGTTAGCATAGAACGAGAAGAAATT
ATAAATAAGGTGTATTTCGGCAATTACCTTGCAAATATCTTTGTACTAAACTAAAAAGAT
AAAATAAGTTCACTTCATATGTAATTATGTACAAAACGTTTAATTTATTTTGATCTCTTT
AGAAGTATAACAGAGAAAACATTCAAGAATATTAAAGTCTTGTAATGTTTGCTAATATAA
AAGTGTTGTATTATCTTGCGTGGATAGCATCACAACAACTATATATATATATGACATAGA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGCGAGGCATGAGGTACCACCCAATAGACGTGGAGACCTCGGTCATCAGAGCACACAA
GAGCGTCACGGAGTGCGCCGTGTTCACCTGGACCAACCTGCTGGTGGTGGTGGTGGAGCT
GGACGGGTCCGAGCAGGAAGCCCTGGACCTGGTGCCCCTGGTCACCAACGTGGTGCTGGG
GGAGCACTACCTGGTGGTGGGCGTGGTGGTGGTGGTGGACATCGGCGTCATCCCCATCAA
CTCCCGGGGCGAGAAGCATCGCATGCACCTGCGCGACGGCTTCCTGGCCGACCAGCTGGA
CCCCATCTACGTGGCCTACAACATGTAGGCCCGCGGGCGGCTCGGGCGGCCCAAAGATGC
GACGTGTGCTCAGAAGGACTTTGCGTGCCTGCCTTCAGTTTGTCGGAAAAGCCCATTTCG
AAAACTTCCTTTTCTTTCTTTTTTTTGAATTATTGGATAATAAGTGCTTTCTTCGTACAT
GTGGTATTTTGTTAAGCCAAAATAGCGATTAAAAGAAGTATCTGCCCTCCAGGTGGGTTC
TTTTAAGCAGTTTATGTAGTGTGACAAAGAATTGTTTTCTCTGTTTTAATGTGTCATGAA
GTCCTAATGACATGGACCTGCTACTGATTTAAGCCATTGCTAGATCTCATCCTTTTAGGG
ACGTTTGCTGAGGTACGAGAAAACCTTCCAGTTAGATTTTAGCAGCTTTCTCTGTCAGAG
TGTGCTGAAGAAACAGGCTCATACACGGCCTTTGAAGTTAGCATAGAACGAGAAGAAATT
ATAAATAAGGTGTATTTCGGCAATTACCTTGCAAATATCTTTGTACTAAACTAAAAAGAT
AAAATAAGTTCACTTCATATGTAATTATGTACAAAACGTTTAATTTATTTTGATCTCTTT
AGAAGTATAACAGAGAAAACATTCAAGAATATTAAAGTCTTGTAATGTTTGCTAATATAA
AAGTGTTGTATTATCTTGCGTGGATAGCATCACAACAACTATATATATATATGACATAGA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
859-1000, + strand, RNAmicro p=0.988081 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
859-1000, + strand, RNAmicro p=0.988081 |
|
77-328, gnl|bosTau2|chr13 (31946250-31945999) |
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77-328, gnl|canFam2|chr2 (37316933-37316651) |
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77-328, gnl|danRer3|chr24 (25568917-25569186) |
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77-328, gnl|dasNov1|scaffold_43865 (3514-3795) |
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77-328, gnl|echTel1|scaffold_313548 (129383-129669) |
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77-328, gnl|fr1|chrUn (216378162-216377875) |
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77-328, gnl|galGal2|chr2 (9336648-9336933) |
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77-328, gnl|hg17|chr10 (313263-313552) |
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77-328, gnl|Hg17|chr10 (313516-313292) |
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77-328, gnl|loxAfr1|scaffold_9656 (52981-53263) |
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77-328, gnl|mm7|chr13 (9578864-9578579) |
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77-328, gnl|Mm7|chr13 (9578609-9578841) |
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77-328, gnl|monDom2|scaffold_7 (23251772-23252057) |
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77-328, gnl|oryCun1|scaffold_204893 (3874-4147) |
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77-328, gnl|panTro1|chr8 (345343-345632) |
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77-328, gnl|rheMac2|chr9 (233787-234072) |
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77-328, gnl|rn3|chr17 (71447960-71448244) |
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77-328, gnl|tetNig1|chrUn_random (132865789-132866051) |
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77-328, gnl|xenTro1|scaffold_378 (971031-970749) |
| |
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357-1018, gnl|bosTau2|chr13 (31945465-31944790) |
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357-1018, gnl|Hg17|chr10 (313079-312392) |
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357-1018, gnl|Mm7|chr13 (9579049-9579754) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
77-328, gnl|bosTau2|chr13 (31946250-31945999) |
|
77-328, gnl|canFam2|chr2 (37316933-37316651) |
|
77-328, gnl|danRer3|chr24 (25568917-25569186) |
|
77-328, gnl|dasNov1|scaffold_43865 (3514-3795) |
|
77-328, gnl|echTel1|scaffold_313548 (129383-129669) |
|
77-328, gnl|fr1|chrUn (216378162-216377875) |
|
77-328, gnl|galGal2|chr2 (9336648-9336933) |
|
77-328, gnl|hg17|chr10 (313263-313552) |
|
77-328, gnl|Hg17|chr10 (313516-313292) |
|
77-328, gnl|loxAfr1|scaffold_9656 (52981-53263) |
|
77-328, gnl|mm7|chr13 (9578864-9578579) |
|
77-328, gnl|Mm7|chr13 (9578609-9578841) |
|
77-328, gnl|monDom2|scaffold_7 (23251772-23252057) |
|
77-328, gnl|oryCun1|scaffold_204893 (3874-4147) |
|
77-328, gnl|panTro1|chr8 (345343-345632) |
|
77-328, gnl|rheMac2|chr9 (233787-234072) |
|
77-328, gnl|rn3|chr17 (71447960-71448244) |
|
77-328, gnl|tetNig1|chrUn_random (132865789-132866051) |
|
77-328, gnl|xenTro1|scaffold_378 (971031-970749) |
| |
|
357-1018, gnl|bosTau2|chr13 (31945465-31944790) |
|
357-1018, gnl|Hg17|chr10 (313079-312392) |
|
357-1018, gnl|Mm7|chr13 (9579049-9579754) |
