Non-Coding RNA Search

Ss1.1-rplac_6111.5

Sequence:


               
               GGGAGACCTCTTTTTCACTTCAAGGCTAGATGGTGCGGTTATGTCACAGCACTTGCCATT
TTAAAGGCTGCCACCCCAAGCCTCCATCTTAATATTTCACTCCAGCTTAGTTTTTGCAAG
CTTGCACGTTTCTCCTTTGCATTTATTTTGATAAGTGGGCATGAACGTGTAAACAAGTGT
GCAATTAAATATGAAGCCTAAATAGCTGTTTTGCAGACTTACTTCCCAAGCACTTATTTA
AACACTACCCTCATGGGAAAATACTGTTTACTTGTGAGCTGTCTTAATTGATGTGGGATT
CTGCTTTAGACAAAAGCGCAAAAGTTCCCTTTATGGCTGAATGGTTAGTTACTTCAAGAC
CATCCAAGTTGGCCGAGAATTAGAGGTTTCCAGCTTATTAGCCCAAACCTTTGTAATCTG
TGGCGGTGTTCTTTTATCATTTATTTATTTTTTTTTAACTTGGCCAGATACATCTCTCCC
TGCTGGGGGGCAATTTCCAAGCCATTAAAAGTCCCTCACGGCTGCCACAGCTTCCCGGCC
GTTCTGTTCTGGGGGTCCAGCAGCCAGCCCACACTCCCCCAAAATACATGGCAATCACAC
CGCTCCTTTCTGATGACATCTTGTTTGTTTGGGGTCGAGGGAAGGGGTAGGATATCTGGA
CGCGAAGCCTGTTTCCATTCATGTTTCTTTCTGTAGGGTTAAAAGTGTGGTCGGATCCAT
TCGGCAGGAAGTGAGAGGGCTGTCCCCCCGCTCTGATGAGGAAGGCAGACCGCGTCCCTC
CGAGTCTTCAGGCTTTCAATTCTGCAGCAGGTGCCCCGAGGAACTCACGTGGCCAGCGAA
CGACAGTCGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGACCTCTTTTTCACTTCAAGGCTAGATGGTGCGGTTATGTCACAGCACTTGCCATT
TTAAAGGCTGCCACCCCAAGCCTCCATCTTAATATTTCACTCCAGCTTAGTTTTTGCAAG
CTTGCACGTTTCTCCTTTGCATTTATTTTGATAAGTGGGCATGAACGTGTAAACAAGTGT
GCAATTAAATATGAAGCCTAAATAGCTGTTTTGCAGACTTACTTCCCAAGCACTTATTTA
AACACTACCCTCATGGGAAAATACTGTTTACTTGTGAGCTGTCTTAATTGATGTGGGATT
CTGCTTTAGACAAAAGCGCAAAAGTTCCCTTTATGGCTGAATGGTTAGTTACTTCAAGAC
CATCCAAGTTGGCCGAGAATTAGAGGTTTCCAGCTTATTAGCCCAAACCTTTGTAATCTG
TGGCGGTGTTCTTTTATCATTTATTTATTTTTTTTTAACTTGGCCAGATACATCTCTCCC
TGCTGGGGGGCAATTTCCAAGCCATTAAAAGTCCCTCACGGCTGCCACAGCTTCCCGGCC
GTTCTGTTCTGGGGGTCCAGCAGCCAGCCCACACTCCCCCAAAATACATGGCAATCACAC
CGCTCCTTTCTGATGACATCTTGTTTGTTTGGGGTCGAGGGAAGGGGTAGGATATCTGGA
CGCGAAGCCTGTTTCCATTCATGTTTCTTTCTGTAGGGTTAAAAGTGTGGTCGGATCCAT
TCGGCAGGAAGTGAGAGGGCTGTCCCCCCGCTCTGATGAGGAAGGCAGACCGCGTCCCTC
CGAGTCTTCAGGCTTTCAATTCTGCAGCAGGTGCCCCGAGGAACTCACGTGGCCAGCGAA
CGACAGTCGTAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               427-542, - strand, RNAz p=0.994609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-542, - strand, RNAz p=0.994609

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-842, gnl|bosTau2|chr6 (23230573-23231385)
               

               
               3-842, gnl|Hg17|chr4 (25606345-25607172)
               

               
               3-842, gnl|Mm7|chr5 (52650563-52651327)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-842, gnl|bosTau2|chr6 (23230573-23231385)
               

               
               3-842, gnl|Hg17|chr4 (25606345-25607172)
               

               
               3-842, gnl|Mm7|chr5 (52650563-52651327)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               pla (0.133672)

	3-842, gnl\|bosTau2\|chr6 (23230573-23231385)
	3-842, gnl\|Hg17\|chr4 (25606345-25607172)
	3-842, gnl\|Mm7\|chr5 (52650563-52651327)