Non-Coding RNA Search

Ss1.1-rplac_6130.5

Sequence:


               
               AAGGTCTGGCCCAGGAGCTTCAGGAGCGGCCAGTCCACGGGCAGCGTGGGCAGGAGGGAG
AGCAGGCCGGCCGCCACCTCGGTCACCAGGGCCCTCCGGGTGTAGGGCTCGGCCGAGGCG
CTGAGGCTCACGTAGCTGGTGACGGTGAAGAAGACGGACACCACGGCCAGCTCCGAGCAG
GGGATGCAGTCCTTGCTGGCGACGGGGAAGGAGAAGATGAGGAAGACGACGGACAGCAGG
AAGTGGACGTAGGGCTCCAGGTGGTTCCAGCTGAAGTTGCCCTCGGCCTGCTCCACGTCC
AGGTTGGGCTCGAAGCGCAGGAGCAGGCTGGTGAGCGCGCGGAAGCTCTCCCAGGCCTTG
CTGTCCTGGAAGACCTTGAGGGTGCAGATCACCATGGAGACGAAGGCCAGGTAGAAGACC
ACAAGGGGCACGACGACGGCGAAGAAGTCGATGGTGAGGTTGCTGATGATGAAGAAGAAG
ACCAGGGCGTTGATGTGGTGGGTGGGCACCAGGGTGGACAGCCAGTGCAGGCCCGCCCGG
GACGCCACGTCGATCAGGTACTCCTTCAGCTCTATGATCACGTGCAGGGGGTACTTGACC
ACCTTCAGGCGCAGGGGCAGGTCCTCGGGGCTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTCTGGCCCAGGAGCTTCAGGAGCGGCCAGTCCACGGGCAGCGTGGGCAGGAGGGAG
AGCAGGCCGGCCGCCACCTCGGTCACCAGGGCCCTCCGGGTGTAGGGCTCGGCCGAGGCG
CTGAGGCTCACGTAGCTGGTGACGGTGAAGAAGACGGACACCACGGCCAGCTCCGAGCAG
GGGATGCAGTCCTTGCTGGCGACGGGGAAGGAGAAGATGAGGAAGACGACGGACAGCAGG
AAGTGGACGTAGGGCTCCAGGTGGTTCCAGCTGAAGTTGCCCTCGGCCTGCTCCACGTCC
AGGTTGGGCTCGAAGCGCAGGAGCAGGCTGGTGAGCGCGCGGAAGCTCTCCCAGGCCTTG
CTGTCCTGGAAGACCTTGAGGGTGCAGATCACCATGGAGACGAAGGCCAGGTAGAAGACC
ACAAGGGGCACGACGACGGCGAAGAAGTCGATGGTGAGGTTGCTGATGATGAAGAAGAAG
ACCAGGGCGTTGATGTGGTGGGTGGGCACCAGGGTGGACAGCCAGTGCAGGCCCGCCCGG
GACGCCACGTCGATCAGGTACTCCTTCAGCTCTATGATCACGTGCAGGGGGTACTTGACC
ACCTTCAGGCGCAGGGGCAGGTCCTCGGGGCTCTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               480-599, + strand, RNAz p=0.868211

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-599, + strand, RNAz p=0.868211

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-604, gnl|bosTau2|chr6 (59204643-59205246)
               

               
               1-604, gnl|Hg17|chr4 (6421057-6420454)
               

               
               1-604, gnl|Mm7|chr5 (36049471-36050074)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-604, gnl|bosTau2|chr6 (59204643-59205246)
               

               
               1-604, gnl|Hg17|chr4 (6421057-6420454)
               

               
               1-604, gnl|Mm7|chr5 (36049471-36050074)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	1-604, gnl\|bosTau2\|chr6 (59204643-59205246)
	1-604, gnl\|Hg17\|chr4 (6421057-6420454)
	1-604, gnl\|Mm7\|chr5 (36049471-36050074)