Non-Coding RNA Search

Ss1.1-rplac_6244.5

Sequence:


               
               CTCAGGTCACCACCAAATATGTGCTCTGGGTGGACGATGACTTCATCTTCAACAGCAAGA
CCAGGATCGAGGCGCTGGTGGACGTCCTAGAGAAAACGGAACTGGACGTGGTAGGTGGCA
GGGTGATTGAAAACACATTCCAGTTCAAGCTGTTGCTGGAGCAGGGGAAGAATGGCGACT
GTCTCCACCGGCAGTCAGGATTTTTCCGGCCCGTGGATGGCTTCCCCGGTTGCGTGGTTA
CCAGTGGCGTTGTCAACTTCTTCCTGGCTCACACAGAGCGACTCCAAAGAGTTGGCTTCG
ACCCCCGGCTGCAGCGAGTGGCTCACTCAGAGTTCTTTATTGATGGGCTCGGGAGCCTGC
TCGTGGGGTCCTGCCCACAGGTGATCATAGGTCACCAGCCCCATTTACCAGTGATGGACC
CAGAGCTGGCCGCCCTGGAGGGGAACTACAGCAGGTATCGGGCCAACACCAAAGCCCAGA
TCAAATTCAAGTTGGCTCTCCACTACTTCAAGAACCATCTTCAATGTGCCACCTAAGGTA
TCTGGGCATTGGAAAAGCGCTGGGCTGCCTGGTTGCAAGTATCTAAGACAGCAGATACGG
TGGCTGGGATACCAATATTTGAACTCCTCATAAGATAAGCATTGTAATGCCCAGGGAGCA
GGGTAGGCAGGTGGGTCTGACTCCGTTACTGGAAGTTCCAATAAAAGTTCAGGGTCATTA
GAAATGGACCAGTCACTGAGGTGGGCAATGGAGACTTCATTCATAACGATTACGGCGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGGTCACCACCAAATATGTGCTCTGGGTGGACGATGACTTCATCTTCAACAGCAAGA
CCAGGATCGAGGCGCTGGTGGACGTCCTAGAGAAAACGGAACTGGACGTGGTAGGTGGCA
GGGTGATTGAAAACACATTCCAGTTCAAGCTGTTGCTGGAGCAGGGGAAGAATGGCGACT
GTCTCCACCGGCAGTCAGGATTTTTCCGGCCCGTGGATGGCTTCCCCGGTTGCGTGGTTA
CCAGTGGCGTTGTCAACTTCTTCCTGGCTCACACAGAGCGACTCCAAAGAGTTGGCTTCG
ACCCCCGGCTGCAGCGAGTGGCTCACTCAGAGTTCTTTATTGATGGGCTCGGGAGCCTGC
TCGTGGGGTCCTGCCCACAGGTGATCATAGGTCACCAGCCCCATTTACCAGTGATGGACC
CAGAGCTGGCCGCCCTGGAGGGGAACTACAGCAGGTATCGGGCCAACACCAAAGCCCAGA
TCAAATTCAAGTTGGCTCTCCACTACTTCAAGAACCATCTTCAATGTGCCACCTAAGGTA
TCTGGGCATTGGAAAAGCGCTGGGCTGCCTGGTTGCAAGTATCTAAGACAGCAGATACGG
TGGCTGGGATACCAATATTTGAACTCCTCATAAGATAAGCATTGTAATGCCCAGGGAGCA
GGGTAGGCAGGTGGGTCTGACTCCGTTACTGGAAGTTCCAATAAAAGTTCAGGGTCATTA
GAAATGGACCAGTCACTGAGGTGGGCAATGGAGACTTCATTCATAACGATTACGGCGGAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               101-330, gnl|bosTau2|chr19 (30191159-30190931)
               

               
               101-330, gnl|Hg17|chr17 (44601033-44601261)
               

               
               101-330, gnl|Mm7|chr11 (95976017-95975789)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-330, gnl|bosTau2|chr19 (30191159-30190931)
               

               
               101-330, gnl|Hg17|chr17 (44601033-44601261)
               

               
               101-330, gnl|Mm7|chr11 (95976017-95975789)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.267344)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               cty (0.10408)

	101-330, gnl\|bosTau2\|chr19 (30191159-30190931)
	101-330, gnl\|Hg17\|chr17 (44601033-44601261)
	101-330, gnl\|Mm7\|chr11 (95976017-95975789)