Non-Coding RNA Search

Ss1.1-rplac_6343.5

Sequence:


               
               ATCGACCTTCTGTCGAAGAAATTCTTGAGAATCCTTTGATAGCAGACCTGGTTGCAGAAG
AGCAAAGAAGAAATCCCGAGAGAAGAGGGCCACGGTCAGGGGAACCAGAAAAGCTGCAGG
ACTCCAGTCCTGTGCTAAGTGAGCTGAAACTGAAGGAAATACACTTACAGGAGCGGGAGC
GAGCTCTCAAAGCCAGGGAAGAAAGCCTGGAGCAGAAGGAGCGAGAGCTTTGTGTTCGTG
AGCGGCTGGCAGAGAACAAACTGGCCAGGGCAGAAAGTCTGCTGAAGAATTACAGTCTGC
TGAAGGACCAGAAGTTCCTGTCTCTGGAGGGCGGTCCAGAGCGTTTTGATCTTCCGTCCT
CGGGAATGAAGAAGAAGGTTCACTTCAGCGGGGAGAGTAAGGAGAACGTCGCAAGGAGTG
AGACTCCTGAGAGTCAGCTCAGCTCCAAATCCAAGTGCAAAGACCTGAAGAGGAGGCTCC
ATGCTGCTCAGCTGCGGGCGCAGGCCCTGGCAGACATTGAGAAAACGTACCAGCTGAAAA
GCAGGCAGATCCTGGGCATGCGCTAGCCTGGCCCAGAGACAGCGAGCGGCGAGCTGGGTC
TAACACTGCCCGCCCTTCGAGGCTGGCATTCCCTGCCGCGGCCTACACGCGTGCTGCCGT
GAACCGTGCTTTTTCTGTAGGAAGCCTGATGTTTCGGGGTCGCTTTTGCTGTTCCTCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGACCTTCTGTCGAAGAAATTCTTGAGAATCCTTTGATAGCAGACCTGGTTGCAGAAG
AGCAAAGAAGAAATCCCGAGAGAAGAGGGCCACGGTCAGGGGAACCAGAAAAGCTGCAGG
ACTCCAGTCCTGTGCTAAGTGAGCTGAAACTGAAGGAAATACACTTACAGGAGCGGGAGC
GAGCTCTCAAAGCCAGGGAAGAAAGCCTGGAGCAGAAGGAGCGAGAGCTTTGTGTTCGTG
AGCGGCTGGCAGAGAACAAACTGGCCAGGGCAGAAAGTCTGCTGAAGAATTACAGTCTGC
TGAAGGACCAGAAGTTCCTGTCTCTGGAGGGCGGTCCAGAGCGTTTTGATCTTCCGTCCT
CGGGAATGAAGAAGAAGGTTCACTTCAGCGGGGAGAGTAAGGAGAACGTCGCAAGGAGTG
AGACTCCTGAGAGTCAGCTCAGCTCCAAATCCAAGTGCAAAGACCTGAAGAGGAGGCTCC
ATGCTGCTCAGCTGCGGGCGCAGGCCCTGGCAGACATTGAGAAAACGTACCAGCTGAAAA
GCAGGCAGATCCTGGGCATGCGCTAGCCTGGCCCAGAGACAGCGAGCGGCGAGCTGGGTC
TAACACTGCCCGCCCTTCGAGGCTGGCATTCCCTGCCGCGGCCTACACGCGTGCTGCCGT
GAACCGTGCTTTTTCTGTAGGAAGCCTGATGTTTCGGGGTCGCTTTTGCTGTTCCTCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57791147|gb|AAW56418.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57791147|gb|AAW56418.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-218, + strand, RNAz p=0.684361
               

               
               457-591, - strand, RNAz p=0.759128

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-218, + strand, RNAz p=0.684361
               

               
               457-591, - strand, RNAz p=0.759128

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC065932, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC065932, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-218, gnl|bosTau2|chr16 (53795058-53795275)
               

               
               1-218, gnl|Hg17|chr1 (208231062-208230845)
               

               
               1-218, gnl|Mm7|chr1 (191380082-191380299)
               


               
               338-591, gnl|bosTau2|chr16 (53799897-53800149)
               

               
               338-591, gnl|Hg17|chr1 (208225391-208225138)
               

               
               338-591, gnl|Mm7|chr1 (191384060-191384304)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr16 (53795058-53795275)
               

               
               1-218, gnl|Hg17|chr1 (208231062-208230845)
               

               
               1-218, gnl|Mm7|chr1 (191380082-191380299)
               


               
               338-591, gnl|bosTau2|chr16 (53799897-53800149)
               

               
               338-591, gnl|Hg17|chr1 (208225391-208225138)
               

               
               338-591, gnl|Mm7|chr1 (191384060-191384304)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	40-218, + strand, RNAz p=0.684361
	457-591, - strand, RNAz p=0.759128

	1-218, gnl\|bosTau2\|chr16 (53795058-53795275)
	1-218, gnl\|Hg17\|chr1 (208231062-208230845)
	1-218, gnl\|Mm7\|chr1 (191380082-191380299)

	338-591, gnl\|bosTau2\|chr16 (53799897-53800149)
	338-591, gnl\|Hg17\|chr1 (208225391-208225138)
	338-591, gnl\|Mm7\|chr1 (191384060-191384304)