Non-Coding RNA Search

Ss1.1-rplac_6446.5

Sequence:


               
               CTAACCATGAGGTAATGTTTACTTCTCTGCCACAACACTGTGCGCCCTCTCAGATCTGGC
AACAATTTAACATAAGGAAAGACTTTAGACCTTCACACCCTTTTAGTGAGAATAAACGAC
CTTAGCTCAAACTTTCCACAAAGCTAAGAAGTCTCATAAGACATCTCTCCATCCTTATCT
TAGGTGGATCTGCACAAATGCCTCGCGGCCATATGTCTCCCAGGTCTCAAAGCCCTGCCT
TCCCAGCCCTGGGTCCCGCACTGCAGAGGAGATCTTGATGTTTATGTTTGAAGGCCAAGC
ACCTTCTGCCTCTGAAGCAAGGAGAACAACAACAACAACAACAACAAAAAAGAAGCTATG
TGGGCAAAGAAAATAATGCCAAGCAGTAGTTGAGTGGCTGGTGAAGAAGCCTCACAGAGC
TCTCTCCAAGGGTCACTAAAGGTATGAACAGTTCCCGATCTAGTCAATAGCAAAATGCAC
TGATGGCTAGGGCATCTGTTTAGCAGAAGAAGAAAAATATCAATAGCATAAAACTGCCCT
CCTACTTTTGAAAAAATAGAGCTGAGATAGAGGATACTGGGTTTGTCATGGTAGGTGCGC
CTTAAGCGCACTTGTCCGCCGGCTCTCCGGCCTCTACAGCTCGGCCCTATTGGTCTGGGC
CTGGCCGTCCCCCTCGCTGCCACCTGCGCTGCTGCTCTCCGCAGGCGTGAAAGACAGGGA
CGCTGAGTTGATGCAGTATCTCTTGGCGGTTGGACGANGTCCGTCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAACCATGAGGTAATGTTTACTTCTCTGCCACAACACTGTGCGCCCTCTCAGATCTGGC
AACAATTTAACATAAGGAAAGACTTTAGACCTTCACACCCTTTTAGTGAGAATAAACGAC
CTTAGCTCAAACTTTCCACAAAGCTAAGAAGTCTCATAAGACATCTCTCCATCCTTATCT
TAGGTGGATCTGCACAAATGCCTCGCGGCCATATGTCTCCCAGGTCTCAAAGCCCTGCCT
TCCCAGCCCTGGGTCCCGCACTGCAGAGGAGATCTTGATGTTTATGTTTGAAGGCCAAGC
ACCTTCTGCCTCTGAAGCAAGGAGAACAACAACAACAACAACAACAAAAAAGAAGCTATG
TGGGCAAAGAAAATAATGCCAAGCAGTAGTTGAGTGGCTGGTGAAGAAGCCTCACAGAGC
TCTCTCCAAGGGTCACTAAAGGTATGAACAGTTCCCGATCTAGTCAATAGCAAAATGCAC
TGATGGCTAGGGCATCTGTTTAGCAGAAGAAGAAAAATATCAATAGCATAAAACTGCCCT
CCTACTTTTGAAAAAATAGAGCTGAGATAGAGGATACTGGGTTTGTCATGGTAGGTGCGC
CTTAAGCGCACTTGTCCGCCGGCTCTCCGGCCTCTACAGCTCGGCCCTATTGGTCTGGGC
CTGGCCGTCCCCCTCGCTGCCACCTGCGCTGCTGCTCTCCGCAGGCGTGAAAGACAGGGA
CGCTGAGTTGATGCAGTATCTCTTGGCGGTTGGACGANGTCCGTCGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6MZU8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6MZU8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-231, - strand, RNAz p=0.924976

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-231, - strand, RNAz p=0.924976

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC040053, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC040053, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr5 (30601882-30601087)
               

               
               1-768, gnl|Hg17|chr12 (64144001-64143229)
               

               
               1-768, gnl|Mm7|chr10 (120179625-120180439)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr5 (30601882-30601087)
               

               
               1-768, gnl|Hg17|chr12 (64144001-64143229)
               

               
               1-768, gnl|Mm7|chr10 (120179625-120180439)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-768, gnl\|bosTau2\|chr5 (30601882-30601087)
	1-768, gnl\|Hg17\|chr12 (64144001-64143229)
	1-768, gnl\|Mm7\|chr10 (120179625-120180439)