Ss1.1-rplac_6484.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCCACTGTCTCTGTCCAGAACGCCTCGGCCTTCAGGTCCTTTAGCAGAGAAGACGCG TGGCTGGGGCCCCTGACCTCACCCAGCACCTGGCAACACAGACACGGGCATCCTCCTGCT TCAGGCCCGACCTCAGGCTCAAAGAGAGCAAAGGGTCCTGGGGGAGGCCTGGTGGGGGCT GCAGAGAGGACCAGGTGACGACCTGCCCACCATGGGGCAGACCCGGAAGGATCGGGTTTT CACGGCCCTGCTGTGGGCTGCAGCAGTCTCCGGCCTCACCACGCTCGTCCTGATCCTCGT GGAGGCCGCCAGAGTCCACCTACCCGCGCACACCAAGTTTGGGATCGTGTTCGACGCCGG GTCCTCCCACACGTCCCTCTTTGTGTATCAGTGGCCAGCAAACAAGGAGAACGACACGGG TGTGGTCAGCCAGGCCCTGGCCTGCCAGGCGAAAGGTCCTGGAATCTCCTCCTACACCTC CGACCCTGCACAAGCTGGCGAGAGCCTGCAGGGCTGCCTGGACGAGGCGCTGGCGCTGAT CCCCAAGGCCCAGCATAAGGAGACGCCCACGTTCCTGGGGGCCACGGCAGGCATGAGGCT GCTCAGCCAGAAGAACAGCTCTCTGGCGGAGGACATCTTCGCAGCGGTCAGCCGGGCCCT GGGCCGCTCCCCCGTGGACTTCTGGGGTGCCGAGCTCCTGACCGGGCAGGACGAAGGGGC CTTCGGTTGGATCACCATCAACTATGTCCTGGGCAGGCTGGTCAAGTACTCCTTCTCTGG AGAATGGATCCGGCCGCTGGAGGAGACGCTGGTGGGTGCCCTGGACATGGGTGGGGCCTC CACCCAGATCACCTTCGTGCCTGAAGGGCCCATACGGGACCAGAGCACTCAGGCCACGTT CCGCCTCTACGGCTTCGATCACAGCGTCTACACCCACAGCTACCTCTGCTTCGGGCGAGA GCAGATGCTCAACAGGCTCCTGGCTGGGCTGGTGCAGGGCAGCCCGGCCCTCCTGGTCCG CCACCCTTGCTACCACAGTGGCTACCAGGACACGGTGGCCGTGGCCTCTCTGTACGAGTC GCCCTGTGTGCCCACGGCAGCGCCCCCAGACCTCACCATGAACGTGACCGTGGAAGGGAC GGGGAACCCCGGGGCCTGCATCTCGGCCATCCGGAAGCTCTTCAACTTCTCCAGCTGCCA GGGCCGAGAAGACTGCGCCTTCAACGGGGTCTACCAGCCCCCCGTGCGGGGCCGGTTCTA TGCCTTCTCCAGCTTCTACTACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCCACTGTCTCTGTCCAGAACGCCTCGGCCTTCAGGTCCTTTAGCAGAGAAGACGCG TGGCTGGGGCCCCTGACCTCACCCAGCACCTGGCAACACAGACACGGGCATCCTCCTGCT TCAGGCCCGACCTCAGGCTCAAAGAGAGCAAAGGGTCCTGGGGGAGGCCTGGTGGGGGCT GCAGAGAGGACCAGGTGACGACCTGCCCACCATGGGGCAGACCCGGAAGGATCGGGTTTT CACGGCCCTGCTGTGGGCTGCAGCAGTCTCCGGCCTCACCACGCTCGTCCTGATCCTCGT GGAGGCCGCCAGAGTCCACCTACCCGCGCACACCAAGTTTGGGATCGTGTTCGACGCCGG GTCCTCCCACACGTCCCTCTTTGTGTATCAGTGGCCAGCAAACAAGGAGAACGACACGGG TGTGGTCAGCCAGGCCCTGGCCTGCCAGGCGAAAGGTCCTGGAATCTCCTCCTACACCTC CGACCCTGCACAAGCTGGCGAGAGCCTGCAGGGCTGCCTGGACGAGGCGCTGGCGCTGAT CCCCAAGGCCCAGCATAAGGAGACGCCCACGTTCCTGGGGGCCACGGCAGGCATGAGGCT GCTCAGCCAGAAGAACAGCTCTCTGGCGGAGGACATCTTCGCAGCGGTCAGCCGGGCCCT GGGCCGCTCCCCCGTGGACTTCTGGGGTGCCGAGCTCCTGACCGGGCAGGACGAAGGGGC CTTCGGTTGGATCACCATCAACTATGTCCTGGGCAGGCTGGTCAAGTACTCCTTCTCTGG AGAATGGATCCGGCCGCTGGAGGAGACGCTGGTGGGTGCCCTGGACATGGGTGGGGCCTC CACCCAGATCACCTTCGTGCCTGAAGGGCCCATACGGGACCAGAGCACTCAGGCCACGTT CCGCCTCTACGGCTTCGATCACAGCGTCTACACCCACAGCTACCTCTGCTTCGGGCGAGA GCAGATGCTCAACAGGCTCCTGGCTGGGCTGGTGCAGGGCAGCCCGGCCCTCCTGGTCCG CCACCCTTGCTACCACAGTGGCTACCAGGACACGGTGGCCGTGGCCTCTCTGTACGAGTC GCCCTGTGTGCCCACGGCAGCGCCCCCAGACCTCACCATGAACGTGACCGTGGAAGGGAC GGGGAACCCCGGGGCCTGCATCTCGGCCATCCGGAAGCTCTTCAACTTCTCCAGCTGCCA GGGCCGAGAAGACTGCGCCTTCAACGGGGTCTACCAGCCCCCCGTGCGGGGCCGGTTCTA TGCCTTCTCCAGCTTCTACTACAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 454-572, - strand, RNAz p=0.705438 | |
| 804-923, - strand, RNAz p=0.977038 | |
| 833-942, - strand, RNAz p=0.841469 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 454-572, - strand, RNAz p=0.705438 | |
| 804-923, - strand, RNAz p=0.977038 | |
| 833-942, - strand, RNAz p=0.841469 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 206-337, gnl|bosTau2|chr11 (85275045-85275176) | |
| 206-337, gnl|Hg17|chr9 (137608579-137608449) | |
| 206-337, gnl|Mm7|chr2 (25089126-25089258) | |
| 454-606, gnl|bosTau2|chr11 (85275872-85276024) | |
| 454-606, gnl|Hg17|chr9 (137607600-137607448) | |
| 454-606, gnl|Mm7|chr2 (25090237-25090389) | |
| 765-998, gnl|bosTau2|chr11 (85276378-85276611) | |
| 765-998, gnl|canFam2|chr9 (51630839-51630656) | |
| 765-998, gnl|danRer3|chr6 (22908402-22908229) | |
| 765-998, gnl|dasNov1|scaffold_110730 (1267-1450) | |
| 765-998, gnl|echTel1|scaffold_298186 (389-209) | |
| 765-998, gnl|fr1|chrUn (308088582-308088760) | |
| 765-998, gnl|galGal2|chr17 (9924795-9924615) | |
| 765-998, gnl|hg17|chr9 (137606828-137607011) | |
| 765-998, gnl|Hg17|chr9 (137607042-137606809) | |
| 765-998, gnl|loxAfr1|scaffold_186384 (941-756) | |
| 765-998, gnl|mm7|chr2 (25091020-25090837) | |
| 765-998, gnl|Mm7|chr2 (25090807-25091066) | |
| 765-998, gnl|monDom2|scaffold_1 (187828430-187828613) | |
| 765-998, gnl|oryCun1|scaffold_213850 (37943-37775) | |
| 765-998, gnl|panTro1|chr11_random (47941900-47942083) | |
| 765-998, gnl|rheMac2|chr15 (801408-801225) | |
| 765-998, gnl|rn3|chr3 (5231648-5231465) | |
| 765-998, gnl|tetNig1|chrUn_random (85547478-85547306) | |
| 765-998, gnl|xenTro1|scaffold_302 (1074339-1074522) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 206-337, gnl|bosTau2|chr11 (85275045-85275176) | |
| 206-337, gnl|Hg17|chr9 (137608579-137608449) | |
| 206-337, gnl|Mm7|chr2 (25089126-25089258) | |
| 454-606, gnl|bosTau2|chr11 (85275872-85276024) | |
| 454-606, gnl|Hg17|chr9 (137607600-137607448) | |
| 454-606, gnl|Mm7|chr2 (25090237-25090389) | |
| 765-998, gnl|bosTau2|chr11 (85276378-85276611) | |
| 765-998, gnl|canFam2|chr9 (51630839-51630656) | |
| 765-998, gnl|danRer3|chr6 (22908402-22908229) | |
| 765-998, gnl|dasNov1|scaffold_110730 (1267-1450) | |
| 765-998, gnl|echTel1|scaffold_298186 (389-209) | |
| 765-998, gnl|fr1|chrUn (308088582-308088760) | |
| 765-998, gnl|galGal2|chr17 (9924795-9924615) | |
| 765-998, gnl|hg17|chr9 (137606828-137607011) | |
| 765-998, gnl|Hg17|chr9 (137607042-137606809) | |
| 765-998, gnl|loxAfr1|scaffold_186384 (941-756) | |
| 765-998, gnl|mm7|chr2 (25091020-25090837) | |
| 765-998, gnl|Mm7|chr2 (25090807-25091066) | |
| 765-998, gnl|monDom2|scaffold_1 (187828430-187828613) | |
| 765-998, gnl|oryCun1|scaffold_213850 (37943-37775) | |
| 765-998, gnl|panTro1|chr11_random (47941900-47942083) | |
| 765-998, gnl|rheMac2|chr15 (801408-801225) | |
| 765-998, gnl|rn3|chr3 (5231648-5231465) | |
| 765-998, gnl|tetNig1|chrUn_random (85547478-85547306) | |
| 765-998, gnl|xenTro1|scaffold_302 (1074339-1074522) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |