Non-Coding RNA Search

Ss1.1-rplac_6507.5

Sequence:


               
               CTCTGATTTGAATTTCCTGGCCCCCTAAGGCTCGCCCCCCATTCAGCCCCCAGCCCTGCC
TTCGGATGACAGTATTATCCCCCGCCACCGCCACCGCCCCCCTCAGCCTCCCGTCCTGGC
CTTCCTTGTTGGGCCTCTCTGATTCAGGCAGCAGGGGGCGCTGTGATGCCTGTCCTGCTG
GAGTGTTTTATACTGTGAAATGAATTGGCCGGACTGTGGGGGGAGCCCCAGTGGGGACAG
GACCCTTCCCATGCCCCCAAAGCCTTTCCATGGTCTCCCTCCCCCATCTGCCTCCGTGCT
CCCCCCAAAATGAGTTAGACTCAAGGGGGTGACAGAAGCGAGAAGGGGGGGTGACAGTTA
TCTTATCCATCCGCGTGGCCTCTCTCATCAGGAGCCCCCAGACCAAGCCCTGGCCTTTTC
CGTTAAGGCCTGTCCCCCATCCCAGCCTAGGACGCCGACGTCTCCCTCCCCTTGGCCCCC
ACATCCCTTCTAACGAGGGAGCGTGGGGAGAGTGCCAGGGGACCTGACGTTTTTCTGGAG
ATTTCAAGGCTGAGGCTTCGGCCCCCGCCCCCTAGGGTTGCGGGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGATTTGAATTTCCTGGCCCCCTAAGGCTCGCCCCCCATTCAGCCCCCAGCCCTGCC
TTCGGATGACAGTATTATCCCCCGCCACCGCCACCGCCCCCCTCAGCCTCCCGTCCTGGC
CTTCCTTGTTGGGCCTCTCTGATTCAGGCAGCAGGGGGCGCTGTGATGCCTGTCCTGCTG
GAGTGTTTTATACTGTGAAATGAATTGGCCGGACTGTGGGGGGAGCCCCAGTGGGGACAG
GACCCTTCCCATGCCCCCAAAGCCTTTCCATGGTCTCCCTCCCCCATCTGCCTCCGTGCT
CCCCCCAAAATGAGTTAGACTCAAGGGGGTGACAGAAGCGAGAAGGGGGGGTGACAGTTA
TCTTATCCATCCGCGTGGCCTCTCTCATCAGGAGCCCCCAGACCAAGCCCTGGCCTTTTC
CGTTAAGGCCTGTCCCCCATCCCAGCCTAGGACGCCGACGTCTCCCTCCCCTTGGCCCCC
ACATCCCTTCTAACGAGGGAGCGTGGGGAGAGTGCCAGGGGACCTGACGTTTTTCTGGAG
ATTTCAAGGCTGAGGCTTCGGCCCCCGCCCCCTAGGGTTGCGGGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               258-553, - strand, RNAz p=0.996883

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-553, - strand, RNAz p=0.996883

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               511-564, + strand, RNAmicro p=0.973299

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               511-564, + strand, RNAmicro p=0.973299

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               258-343, LB02926.CR_C01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV921831.1|), 
blast E-value=9e-17, identity=90.91% 
               

               
               258-477, 000731BMLB002284HT BMLB Bos taurus cDNA, mRNA sequence 
(gb|DY130191.1|), blast E-value=0.000000000000001, identity=90.24% 
               

               
               258-477, 000730BMLB001256HT BMLB Bos taurus cDNA, mRNA sequence 
(gb|DY143298.1|), blast E-value=0.000000000000001, identity=90.24% 
               

               
               258-477, 000730BMLB001219HT BMLB Bos taurus cDNA, mRNA sequence 
(gb|DY152006.1|), blast E-value=0.000000000000001, identity=90.24% 
               

               
               258-477, 000730BMLB001548HT BMLB Bos taurus cDNA, mRNA sequence 
(gb|DY171455.1|), blast E-value=0.000000000000001, identity=90.24% 
               

               
               258-477, LB02951.CR_B18 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE354951.1|), 
blast E-value=0.000000000000001, identity=90.24%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               258-343, LB02926.CR_C01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV921831.1|), 
blast E-value=9e-17, identity=90.91% 
               

               
               258-477, 000731BMLB002284HT BMLB Bos taurus cDNA, mRNA sequence 
(gb|DY130191.1|), blast E-value=0.000000000000001, identity=90.24% 
               

               
               258-477, 000730BMLB001256HT BMLB Bos taurus cDNA, mRNA sequence 
(gb|DY143298.1|), blast E-value=0.000000000000001, identity=90.24% 
               

               
               258-477, 000730BMLB001219HT BMLB Bos taurus cDNA, mRNA sequence 
(gb|DY152006.1|), blast E-value=0.000000000000001, identity=90.24% 
               

               
               258-477, 000730BMLB001548HT BMLB Bos taurus cDNA, mRNA sequence 
(gb|DY171455.1|), blast E-value=0.000000000000001, identity=90.24% 
               

               
               258-477, LB02951.CR_B18 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE354951.1|), 
blast E-value=0.000000000000001, identity=90.24%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-572, gnl|bosTau2|chr18 (38421673-38421075)
               

               
               1-572, gnl|Hg17|chr19 (50668806-50669375)
               

               
               1-572, gnl|Mm7|chr7 (16986497-16985975)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-572, gnl|bosTau2|chr18 (38421673-38421075)
               

               
               1-572, gnl|Hg17|chr19 (50668806-50669375)
               

               
               1-572, gnl|Mm7|chr7 (16986497-16985975)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	258-343, LB02926.CR_C01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV921831.1\|), blast E-value=9e-17, identity=90.91%
	258-477, 000731BMLB002284HT BMLB Bos taurus cDNA, mRNA sequence (gb\|DY130191.1\|), blast E-value=0.000000000000001, identity=90.24%
	258-477, 000730BMLB001256HT BMLB Bos taurus cDNA, mRNA sequence (gb\|DY143298.1\|), blast E-value=0.000000000000001, identity=90.24%
	258-477, 000730BMLB001219HT BMLB Bos taurus cDNA, mRNA sequence (gb\|DY152006.1\|), blast E-value=0.000000000000001, identity=90.24%
	258-477, 000730BMLB001548HT BMLB Bos taurus cDNA, mRNA sequence (gb\|DY171455.1\|), blast E-value=0.000000000000001, identity=90.24%
	258-477, LB02951.CR_B18 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE354951.1\|), blast E-value=0.000000000000001, identity=90.24%

	1-572, gnl\|bosTau2\|chr18 (38421673-38421075)
	1-572, gnl\|Hg17\|chr19 (50668806-50669375)
	1-572, gnl\|Mm7\|chr7 (16986497-16985975)