Ss1.1-rplac_6569.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTCGAGCGTCTCCTAGACAAAGCGACCAGCCAGCTTCTTCTGGAGACCGACTGGGAGT CCATCCTGCAGATCTGCGACCTGATCCGCCAGGGGGACACGCAAGCAAAGTATGCCGTGA GTTCCATCAAGAAAAAAGTAAACGACAAGAACCCCCATGTGGCCTTGTACGCCCTGGAGG TCATGGAGTCTGTGGTGAAGAACTGCGGCCAGACTGTCCACGACGAGGTGGCCAACAAGC AGACCATGGAGGAGCTGAAGGAGCTGCTGAAGAGGCAGGTGGAAGTCAGCGTGCGCAACA AGATCCTGCACCTGATTCAGGCCTGGGCGCACGCCTTCCGGAACGAGCCCAAGTACAAGG TGGTCCAGGACACGTACCAGATCATGAAGGTGGAAGGACACGTCTTCCCAGAGTTCAAGG AGAGCGATGCCATGTTCGCCGCGGAGAGGGCCCCTGACTGGGTGGATGCCGAGGAATGCC ACCGGTGCCGCGTGCAGTTCGGGGTCATGACCCGCAAGCACCACTGCCCGGGCGTGCGGC CAGATCTTCTGTGGCAAGTGCTCCTCCAGGTGCTCCACCATCCCCAAGTTCGGCATCGAG AAGGAGGTGCGCGTGTGCGAGCCCTGCTACGAGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTCGAGCGTCTCCTAGACAAAGCGACCAGCCAGCTTCTTCTGGAGACCGACTGGGAGT CCATCCTGCAGATCTGCGACCTGATCCGCCAGGGGGACACGCAAGCAAAGTATGCCGTGA GTTCCATCAAGAAAAAAGTAAACGACAAGAACCCCCATGTGGCCTTGTACGCCCTGGAGG TCATGGAGTCTGTGGTGAAGAACTGCGGCCAGACTGTCCACGACGAGGTGGCCAACAAGC AGACCATGGAGGAGCTGAAGGAGCTGCTGAAGAGGCAGGTGGAAGTCAGCGTGCGCAACA AGATCCTGCACCTGATTCAGGCCTGGGCGCACGCCTTCCGGAACGAGCCCAAGTACAAGG TGGTCCAGGACACGTACCAGATCATGAAGGTGGAAGGACACGTCTTCCCAGAGTTCAAGG AGAGCGATGCCATGTTCGCCGCGGAGAGGGCCCCTGACTGGGTGGATGCCGAGGAATGCC ACCGGTGCCGCGTGCAGTTCGGGGTCATGACCCGCAAGCACCACTGCCCGGGCGTGCGGC CAGATCTTCTGTGGCAAGTGCTCCTCCAGGTGCTCCACCATCCCCAAGTTCGGCATCGAG AAGGAGGTGCGCGTGTGCGAGCCCTGCTACGAGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 278-397, - strand, RNAz p=0.6271 | |
| 288-397, - strand, RNAz p=0.636094 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 278-397, - strand, RNAz p=0.6271 | |
| 288-397, - strand, RNAz p=0.636094 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 271-397, gnl|bosTau2|chr19 (45281854-45281980) | |
| 271-397, gnl|canFam2|chr9 (3497828-3497645) | |
| 271-397, gnl|danRer3|chrUn (152994594-152994735) | |
| 271-397, gnl|echTel1|scaffold_311908 (44744-44915) | |
| 271-397, gnl|fr1|chrUn (127526196-127526358) | |
| 271-397, gnl|galGal2|chr3_random (627936-628119) | |
| 271-397, gnl|hg17|chr17 (77266100-77266282) | |
| 271-397, gnl|Hg17|chr17 (77266137-77266263) | |
| 271-397, gnl|loxAfr1|scaffold_124658 (943-1124) | |
| 271-397, gnl|mm7|chr11 (120580486-120580678) | |
| 271-397, gnl|Mm7|chr11 (120580523-120580649) | |
| 271-397, gnl|monDom2|scaffold_18 (14427811-14428008) | |
| 271-397, gnl|rheMac2|chr16 (77162672-77162854) | |
| 271-397, gnl|tetNig1|chr3 (10835544-10835710) | |
| 271-397, gnl|xenTro1|scaffold_413 (1072993-1073149) | |
| 517-636, gnl|bosTau2|chr19 (45284235-45284353) | |
| 517-636, gnl|canFam2|chr9 (3495155-3495020) | |
| 517-636, gnl|danRer3|chrUn (152998517-152998638) | |
| 517-636, gnl|dasNov1|scaffold_27955 (44150-44019) | |
| 517-636, gnl|echTel1|scaffold_311908 (46912-47048) | |
| 517-636, gnl|fr1|chrUn (127526820-127526939) | |
| 517-636, gnl|galGal2|chr3_random (629436-629567) | |
| 517-636, gnl|hg17|chr17 (77268862-77268996) | |
| 517-636, gnl|Hg17|chr17 (77268880-77268998) | |
| 517-636, gnl|loxAfr1|scaffold_124658 (4187-4323) | |
| 517-636, gnl|mm7|chr11 (120584144-120584279) | |
| 517-636, gnl|Mm7|chr11 (120584163-120584281) | |
| 517-636, gnl|monDom2|scaffold_18 (14430836-14430973) | |
| 517-636, gnl|oryCun1|scaffold_204605 (12195-12070) | |
| 517-636, gnl|panTro1|chr19 (81005144-81005278) | |
| 517-636, gnl|rheMac2|chr16 (77166039-77166168) | |
| 517-636, gnl|rn3|chr15 (42229907-42230041) | |
| 517-636, gnl|tetNig1|chr3 (10836161-10836280) | |
| 517-636, gnl|xenTro1|scaffold_413 (1073694-1073813) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 271-397, gnl|bosTau2|chr19 (45281854-45281980) | |
| 271-397, gnl|canFam2|chr9 (3497828-3497645) | |
| 271-397, gnl|danRer3|chrUn (152994594-152994735) | |
| 271-397, gnl|echTel1|scaffold_311908 (44744-44915) | |
| 271-397, gnl|fr1|chrUn (127526196-127526358) | |
| 271-397, gnl|galGal2|chr3_random (627936-628119) | |
| 271-397, gnl|hg17|chr17 (77266100-77266282) | |
| 271-397, gnl|Hg17|chr17 (77266137-77266263) | |
| 271-397, gnl|loxAfr1|scaffold_124658 (943-1124) | |
| 271-397, gnl|mm7|chr11 (120580486-120580678) | |
| 271-397, gnl|Mm7|chr11 (120580523-120580649) | |
| 271-397, gnl|monDom2|scaffold_18 (14427811-14428008) | |
| 271-397, gnl|rheMac2|chr16 (77162672-77162854) | |
| 271-397, gnl|tetNig1|chr3 (10835544-10835710) | |
| 271-397, gnl|xenTro1|scaffold_413 (1072993-1073149) | |
| 517-636, gnl|bosTau2|chr19 (45284235-45284353) | |
| 517-636, gnl|canFam2|chr9 (3495155-3495020) | |
| 517-636, gnl|danRer3|chrUn (152998517-152998638) | |
| 517-636, gnl|dasNov1|scaffold_27955 (44150-44019) | |
| 517-636, gnl|echTel1|scaffold_311908 (46912-47048) | |
| 517-636, gnl|fr1|chrUn (127526820-127526939) | |
| 517-636, gnl|galGal2|chr3_random (629436-629567) | |
| 517-636, gnl|hg17|chr17 (77268862-77268996) | |
| 517-636, gnl|Hg17|chr17 (77268880-77268998) | |
| 517-636, gnl|loxAfr1|scaffold_124658 (4187-4323) | |
| 517-636, gnl|mm7|chr11 (120584144-120584279) | |
| 517-636, gnl|Mm7|chr11 (120584163-120584281) | |
| 517-636, gnl|monDom2|scaffold_18 (14430836-14430973) | |
| 517-636, gnl|oryCun1|scaffold_204605 (12195-12070) | |
| 517-636, gnl|panTro1|chr19 (81005144-81005278) | |
| 517-636, gnl|rheMac2|chr16 (77166039-77166168) | |
| 517-636, gnl|rn3|chr15 (42229907-42230041) | |
| 517-636, gnl|tetNig1|chr3 (10836161-10836280) | |
| 517-636, gnl|xenTro1|scaffold_413 (1073694-1073813) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| med (0.116252) |