Non-Coding RNA Search

Ss1.1-rplac_6576.5

Sequence:


               
               ATTTTTTTGAAAATATCAAGAACATAGTTTTGGAGCATCAGCAGTGGCACAAAGACAGAA
AGAATCCACCCTTAAAATCAAAAGTTAAAGATGGAGAAGAAAAGAGTGAAGGAAATTCAC
AACAATCAGAGAGATGTGAAAGGGCAGAATCATTAGCAAGAATAAAATCAAAGGCCTTTT
CAGTTGTTGTTCAGGCATCCAAGTCAAGAAGGCATCGCCAGGTCAAACGTGACTCTTCTG
ACTCTGATTCTGCATCTGGTCAAGGACAAATCAAAGCAACTAGGAAAAAAAGAAACAAAG
AAACACTGAAATCAGCAGGAAGGAAGAGGACCGCCACAAACAGAGGTGACACACAGAATG
CACATAATAAGGAAGATAAATCTTTAAGTCTGAGTATGCCTGTGATTACAGAAGAGGAAG
AGGAGAATGAAAGTTTTAGTGAAACAGAGTTCACTGCACCCAAGAGGAGAAGAAAACAGA
GAACAAAGAGCCTGATGTAGAGTTCTTAATTTTGAACTTTCTGACAGAAGAAAAGGTTTA
TATTTTGTGTATTGAGTGGGAAGACTGCCAGTATTAAAAATAATTCTTCTGGGAAGCTGT
AGGTATTTCTTTGAAATAACAGTTCTTTTAATATAGTAATATAATAAAAATACAAAAAAT
TAGGGTAATGATTTACTCTAAAATGTAATTTTAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTTGAAAATATCAAGAACATAGTTTTGGAGCATCAGCAGTGGCACAAAGACAGAA
AGAATCCACCCTTAAAATCAAAAGTTAAAGATGGAGAAGAAAAGAGTGAAGGAAATTCAC
AACAATCAGAGAGATGTGAAAGGGCAGAATCATTAGCAAGAATAAAATCAAAGGCCTTTT
CAGTTGTTGTTCAGGCATCCAAGTCAAGAAGGCATCGCCAGGTCAAACGTGACTCTTCTG
ACTCTGATTCTGCATCTGGTCAAGGACAAATCAAAGCAACTAGGAAAAAAAGAAACAAAG
AAACACTGAAATCAGCAGGAAGGAAGAGGACCGCCACAAACAGAGGTGACACACAGAATG
CACATAATAAGGAAGATAAATCTTTAAGTCTGAGTATGCCTGTGATTACAGAAGAGGAAG
AGGAGAATGAAAGTTTTAGTGAAACAGAGTTCACTGCACCCAAGAGGAGAAGAAAACAGA
GAACAAAGAGCCTGATGTAGAGTTCTTAATTTTGAACTTTCTGACAGAAGAAAAGGTTTA
TATTTTGTGTATTGAGTGGGAAGACTGCCAGTATTAAAAATAATTCTTCTGGGAAGCTGT
AGGTATTTCTTTGAAATAACAGTTCTTTTAATATAGTAATATAATAAAAATACAAAAAAT
TAGGGTAATGATTTACTCTAAAATGTAATTTTAACA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               3-543, gnl|bosTau2|chr12 (20081532-20081010)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-543, gnl|bosTau2|chr12 (20081532-20081010)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

	cte (0.29274)
	pla (0.267344)
	ova (0.258264)
	aor (0.195274)
	gul (0.177588)
	liv (0.146284)
	ute (0.132784)
	eje (0.0988338)