Non-Coding RNA Search

Ss1.1-rplac_6589.5

Sequence:


               
               CCAACTGGCCTTCCTCTGATTCAGCTCTGGAGTGTGATTGGAGATGAAGTGAGTTCTGTC
CTCCTTTCCCTTCTAATGTCCGGAGACGCTTTGGGTGGCCGTAGTCGGGGGTGATAACGC
TAGTGGCACCTAGTGGGTAGAGGCTGCTAAACATCCTACAGGGCACGTGACAGTCCCCAC
TTGACTACGGTGGATACAAGAGAGTGAAAGTAGATGTGCTCCGGCAGATTCGATCTGACT
TTGTGACCCTGCCGTTCCAGGGAGCAGAGGTCCTTCTGGACAGCGTGATGCCCCTGTCAG
ATGATGACCACTTCTCCCCCGAAGCGGATGCAGCTATGAGCGAGATGACAGGAAACACAG
CACTGCTGGCTCAGGTGACGAGTTACAGCCCAACTGGCCTTCCTCTGATTCAGCTCTGGA
GTGTGATTGGAGATGAAGTGGTGTTGATAAACCGGTCGCTGGTGGAGCGAGGACTTGCTC
AGTGGGTGGACAGCTACTATGCGAGCCTCTGACCCCGTCCCCACGCCACCTCTGGAGAGT
TTTTTTGCACTGTTGAATTTGGGCTTGGCACTCAAGGCGAAGACGTTACATCAGAATTAA
TGTACATCAAACATTGTCCTCCCCAGAGAGTCCTTTCTTTCTCTACTGTCGTCCTATCGA
GCTGTTTCGTCCCTGAGACAAGGAAGGACCTGCGGGTTCTTTTCAAAGCCATGGGGTGGT
CTCTAACAGGCCAGTCGGCTTAACCCGGTTGCAAGCTGTTTAAAAAAAAAATGGAAGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACTGGCCTTCCTCTGATTCAGCTCTGGAGTGTGATTGGAGATGAAGTGAGTTCTGTC
CTCCTTTCCCTTCTAATGTCCGGAGACGCTTTGGGTGGCCGTAGTCGGGGGTGATAACGC
TAGTGGCACCTAGTGGGTAGAGGCTGCTAAACATCCTACAGGGCACGTGACAGTCCCCAC
TTGACTACGGTGGATACAAGAGAGTGAAAGTAGATGTGCTCCGGCAGATTCGATCTGACT
TTGTGACCCTGCCGTTCCAGGGAGCAGAGGTCCTTCTGGACAGCGTGATGCCCCTGTCAG
ATGATGACCACTTCTCCCCCGAAGCGGATGCAGCTATGAGCGAGATGACAGGAAACACAG
CACTGCTGGCTCAGGTGACGAGTTACAGCCCAACTGGCCTTCCTCTGATTCAGCTCTGGA
GTGTGATTGGAGATGAAGTGGTGTTGATAAACCGGTCGCTGGTGGAGCGAGGACTTGCTC
AGTGGGTGGACAGCTACTATGCGAGCCTCTGACCCCGTCCCCACGCCACCTCTGGAGAGT
TTTTTTGCACTGTTGAATTTGGGCTTGGCACTCAAGGCGAAGACGTTACATCAGAATTAA
TGTACATCAAACATTGTCCTCCCCAGAGAGTCCTTTCTTTCTCTACTGTCGTCCTATCGA
GCTGTTTCGTCCCTGAGACAAGGAAGGACCTGCGGGTTCTTTTCAAAGCCATGGGGTGGT
CTCTAACAGGCCAGTCGGCTTAACCCGGTTGCAAGCTGTTTAAAAAAAAAATGGAAGAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12860940|dbj|BAB32084.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12860940|dbj|BAB32084.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               438-771, gnl|bosTau2|chr19 (3545677-3545998)
               

               
               438-771, gnl|Hg17|chr17 (52552610-52552940)
               

               
               438-771, gnl|Mm7|chr11 (88940868-88940579)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               438-771, gnl|bosTau2|chr19 (3545677-3545998)
               

               
               438-771, gnl|Hg17|chr17 (52552610-52552940)
               

               
               438-771, gnl|Mm7|chr11 (88940868-88940579)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

	438-771, gnl\|bosTau2\|chr19 (3545677-3545998)
	438-771, gnl\|Hg17\|chr17 (52552610-52552940)
	438-771, gnl\|Mm7\|chr11 (88940868-88940579)

	cte (0.29274)
	hlv (0.139256)
	pla (0.133672)
	cov (0.132153)
	ese (0.126502)