Ss1.1-rplac_6612.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCAGAGGGAGCTAGGGACTGAAGTTTCTGCGATAGTGTGCGAAGTTAGTTAAAAAAA ACTCCCTCCCTCCTAAGAATCCTTCCGCCTGCAGTAGCGGTGGTGAGGCTGAGGGAGCCG CCATTTTGGATGTTCGGTTCCTGCTGCCACTGCTGCCGCCGCCCCCGAAGCTGCTGGTTT CATTCGAGGTTTCGGGCCGAGGATGCCAGCCCCCATCAGGTTACGGGAGCTGATCCGGAC CATCCGGACAGCCCGAACCCAAGCCGAAGAACGAGAAATGATCCAGAAAGAATGTGCTGC AATCCGGTCATCTTTTAGAGAAGAAGACAATACGTACCGGTGTCGGAACGTGGCAAAATT ACTGTATATGCACATGCTGGGCTACCCTGCTCACTTTGGACAGTTGGAGTGCCTCAAGCT TATTGCCTCTCAGAAATTCACAGACAAACGCATTGGCTATTTAGGGGCAATGCTTCTGTT AGATGAAAGACAAGATGTCCATCTTCTCATGACCAACTGTATCAAGAATGATCTTAATCA TAGCACGCAATATGTACAGGGGCTAGCACTTTGTACCCTCGGCTGCATGGGCTCCTCAGA GATGTGCAGAGATCTTGCAGGAGAGGTAGAGAAACTCCTGAAAACCTCCAACTCTTACTT AAGAAAAAAGCAGCACTGTGTGCTGTTCACGTCATCAGGAAGGTTCCTGAACTTATGGAG ATGTTTTTACCAGCAACAAAAAATTTATTGAATGAAAAGAACCATGGTGTCCTTCACACT TCTGTAGTCCTCCTCACAGAAATGTGTGAGCGAAGCCCAGACATGCTTGCCCATTTCAGA AAGCTTGTGCCCCAATTAGTTCGTATTCTAAAGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCAGAGGGAGCTAGGGACTGAAGTTTCTGCGATAGTGTGCGAAGTTAGTTAAAAAAA ACTCCCTCCCTCCTAAGAATCCTTCCGCCTGCAGTAGCGGTGGTGAGGCTGAGGGAGCCG CCATTTTGGATGTTCGGTTCCTGCTGCCACTGCTGCCGCCGCCCCCGAAGCTGCTGGTTT CATTCGAGGTTTCGGGCCGAGGATGCCAGCCCCCATCAGGTTACGGGAGCTGATCCGGAC CATCCGGACAGCCCGAACCCAAGCCGAAGAACGAGAAATGATCCAGAAAGAATGTGCTGC AATCCGGTCATCTTTTAGAGAAGAAGACAATACGTACCGGTGTCGGAACGTGGCAAAATT ACTGTATATGCACATGCTGGGCTACCCTGCTCACTTTGGACAGTTGGAGTGCCTCAAGCT TATTGCCTCTCAGAAATTCACAGACAAACGCATTGGCTATTTAGGGGCAATGCTTCTGTT AGATGAAAGACAAGATGTCCATCTTCTCATGACCAACTGTATCAAGAATGATCTTAATCA TAGCACGCAATATGTACAGGGGCTAGCACTTTGTACCCTCGGCTGCATGGGCTCCTCAGA GATGTGCAGAGATCTTGCAGGAGAGGTAGAGAAACTCCTGAAAACCTCCAACTCTTACTT AAGAAAAAAGCAGCACTGTGTGCTGTTCACGTCATCAGGAAGGTTCCTGAACTTATGGAG ATGTTTTTACCAGCAACAAAAAATTTATTGAATGAAAAGAACCATGGTGTCCTTCACACT TCTGTAGTCCTCCTCACAGAAATGTGTGAGCGAAGCCCAGACATGCTTGCCCATTTCAGA AAGCTTGTGCCCCAATTAGTTCGTATTCTAAAGAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 3-209, + strand, RNAz p=0.726182 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-209, + strand, RNAz p=0.726182 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AB015317, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 3-209, gnl|bosTau2|chr18 (32376775-32376978) | |
| 3-209, gnl|canFam2|chr5 (80595639-80596104) | |
| 3-209, gnl|dasNov1|scaffold_68182 (5531-5074) | |
| 3-209, gnl|echTel1|scaffold_312513 (7393-7856) | |
| 3-209, gnl|hg17|chr16 (70400102-70400564) | |
| 3-209, gnl|Hg17|chr16 (70400360-70400156) | |
| 3-209, gnl|mm7|chr8 (108379161-108378696) | |
| 3-209, gnl|Mm7|chr8 (108378900-108379105) | |
| 3-209, gnl|monDom2|scaffold_23 (991342-991808) | |
| 3-209, gnl|oryCun1|scaffold_209525 (200149-199684) | |
| 3-209, gnl|rheMac2|chr20 (70845136-70844673) | |
| 3-209, gnl|rn3|chr19 (39655264-39654799) | |
| 402-528, gnl|bosTau2|chr10 (13613573-13613699) | |
| 402-528, gnl|canFam2|chr8 (6797593-6797730) | |
| 402-528, gnl|danRer3|chrNA (163508232-163508100) | |
| 402-528, gnl|dasNov1|scaffold_25365 (11916-11779) | |
| 402-528, gnl|echTel1|scaffold_283735 (40981-41116) | |
| 402-528, gnl|fr1|chrUn (36774488-36774356) | |
| 402-528, gnl|hg17|chr14 (23105606-23105743) | |
| 402-528, gnl|Hg17|chr14 (23105737-23105611) | |
| 402-528, gnl|loxAfr1|scaffold_11267 (25220-25354) | |
| 402-528, gnl|mm7|chr14 (49971749-49971886) | |
| 402-528, gnl|Mm7|chr14 (49971880-49971754) | |
| 402-528, gnl|monDom2|scaffold_12 (26118331-26118194) | |
| 402-528, gnl|oryCun1|scaffold_211309 (40678-40541) | |
| 402-528, gnl|panTro1|chr15 (22075784-22075921) | |
| 402-528, gnl|rheMac2|chr7 (86405867-86406004) | |
| 402-528, gnl|rn3|chr15 (33227283-33227420) | |
| 402-528, gnl|tetNig1|chr5 (5590021-5589889) | |
| 402-528, gnl|xenTro1|scaffold_13 (3086091-3085956) | |
| 529-670, gnl|bosTau2|chr18 (32416312-32416453) | |
| 529-670, gnl|Hg17|chr16 (70364766-70364625) | |
| 529-670, gnl|Mm7|chr8 (108426726-108426867) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-209, gnl|bosTau2|chr18 (32376775-32376978) | |
| 3-209, gnl|canFam2|chr5 (80595639-80596104) | |
| 3-209, gnl|dasNov1|scaffold_68182 (5531-5074) | |
| 3-209, gnl|echTel1|scaffold_312513 (7393-7856) | |
| 3-209, gnl|hg17|chr16 (70400102-70400564) | |
| 3-209, gnl|Hg17|chr16 (70400360-70400156) | |
| 3-209, gnl|mm7|chr8 (108379161-108378696) | |
| 3-209, gnl|Mm7|chr8 (108378900-108379105) | |
| 3-209, gnl|monDom2|scaffold_23 (991342-991808) | |
| 3-209, gnl|oryCun1|scaffold_209525 (200149-199684) | |
| 3-209, gnl|rheMac2|chr20 (70845136-70844673) | |
| 3-209, gnl|rn3|chr19 (39655264-39654799) | |
| 402-528, gnl|bosTau2|chr10 (13613573-13613699) | |
| 402-528, gnl|canFam2|chr8 (6797593-6797730) | |
| 402-528, gnl|danRer3|chrNA (163508232-163508100) | |
| 402-528, gnl|dasNov1|scaffold_25365 (11916-11779) | |
| 402-528, gnl|echTel1|scaffold_283735 (40981-41116) | |
| 402-528, gnl|fr1|chrUn (36774488-36774356) | |
| 402-528, gnl|hg17|chr14 (23105606-23105743) | |
| 402-528, gnl|Hg17|chr14 (23105737-23105611) | |
| 402-528, gnl|loxAfr1|scaffold_11267 (25220-25354) | |
| 402-528, gnl|mm7|chr14 (49971749-49971886) | |
| 402-528, gnl|Mm7|chr14 (49971880-49971754) | |
| 402-528, gnl|monDom2|scaffold_12 (26118331-26118194) | |
| 402-528, gnl|oryCun1|scaffold_211309 (40678-40541) | |
| 402-528, gnl|panTro1|chr15 (22075784-22075921) | |
| 402-528, gnl|rheMac2|chr7 (86405867-86406004) | |
| 402-528, gnl|rn3|chr15 (33227283-33227420) | |
| 402-528, gnl|tetNig1|chr5 (5590021-5589889) | |
| 402-528, gnl|xenTro1|scaffold_13 (3086091-3085956) | |
| 529-670, gnl|bosTau2|chr18 (32416312-32416453) | |
| 529-670, gnl|Hg17|chr16 (70364766-70364625) | |
| 529-670, gnl|Mm7|chr8 (108426726-108426867) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |